Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1686 ATGGCTTTTTGCTCAATATTTTGTTGTGGAAAGGGTTCGGATCGCAAAGCACGAGGAAAGACACAACCTACATGGCGAGTCTTTTCTTTAAAGGAACTACACTCAGCTACAAATAATTTCAACTATGATAATAAGCTTGGAGAAGGGGGATTTGGCAGTGTTTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCTGATATGGAATTTGCTGTTGAAGTTGAGATACTGGGGAGAGTACGACACAAGAATCTTCTTAGTCTACGGGGCTATTGTGCTGAAGGGCAGGAACGGTTAATTGTATATGACTATATGCCAAATTTGAGCCTTCTCTCGCATCTTCATGGACAGCACTCAGCAGAATGCCTTCTCAATTGGAGCCGACGGATGAATATTGGAATTGGGTCAGCAGAGGGCATAGCATATCTCCACCACCAAGCAACTCCACATATCATCCACAGAGATATTAAAGCAAGCAATGTGTTATTGGATGCAGATTTCCAGGTTCAGGTTGCTGATTTTGGTTTTGCTAAGTTGATCCCCGATGGGGCAACACATGTGACTACACGTGTTAAGGGTACCCTTGGGTATCTTGCACCAGAGTATGCTATGTTAGGTAAAGCATCCGAGAGTTGTGATGTCTACAGTTTTGGAATTCTCTTGCTAGAACTTGCTAGTGGCAAGAAACCAATTGAAAGACTAAGTGCAACAACAAAGCGGTCAATAACTGATTGGGCACTACCATTGGCTTGTGAGAAGAAATTTAGTGAAATTGCAGATCCAAGACTAAATGGTGACTATGTGGAGGAAGAGCTTAAAAGGGTTGTTTATGTTGCACTCGTTTGTGCTCAGAATGAGCCTGAGAAGAGACCCACCATGCTGGAGGTGGTAGAGCTACTGAAGGGAGAATCTAAGGATAAGTTCTCTCAACTAGAGAATCATGAACTATTCAGAAGCCCTCAATCTACAGATAACAATGACAGGGGATCAGCTGCTGAAGATAGTTCTGACTTCATATCAGAAGAGACTGCATCAAAACCTGAGCCGAAGGAAAATCCTGGGCCATAA 1101 0.4305 MAFCSIFCCGKGSDRKARGKTQPTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILGRVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLNWSRRMNIGIGSAEGIAYLHHQATPHIIHRDIKASNVLLDADFQVQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELASGKKPIERLSATTKRSITDWALPLACEKKFSEIADPRLNGDYVEEELKRVVYVALVCAQNEPEKRPTMLEVVELLKGESKDKFSQLENHELFRSPQSTDNNDRGSAAEDSSDFISEETASKPEPKENPGP 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1686 366 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1686 366 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Dere12g1686 366 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Dere12g1686 366 PIRSF ILK 10 329 - -
Dere12g1686 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Dere12g1686 366 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Dere12g1686 366 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1686 366 MobiDBLite consensus disorder prediction 321 366 - -
Dere12g1686 366 MobiDBLite consensus disorder prediction 341 366 - -
Dere12g1686 366 MobiDBLite consensus disorder prediction 325 340 - -
Dere12g1686 366 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Dere12g1686 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Dere12g1686 366 CDD STKc_IRAK 46 313 - -
Dere12g1686 366 Pfam Protein tyrosine and serine/threonine kinase 42 311 IPR001245 GO:0004672|GO:0006468
Dere12g1686 366 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 341 - -
Dere12g1686 366 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1686 Dere-ChrDere12 29326089 29329134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1686 28 314 Trihelix Transcription Factor Family AT1G70460 50.859 1.98e-95 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Dere12g1686 PK_Tyr_Ser-Thr 1.5e-43 CL0016