Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1667 ATGGCGCAAATTTTGCTACATGGGACTCTCCATGTCACGATTTTTGAGGTGGATAGGCTGAAGTCGGGCGGTGGCAATATCTTCAGCAAGCTCAAGGAAAATCTTGAGGAGGCAGTTGGTTTTGGGAAGGGTGTTACTAAACTCTATGCAACAATTGATCTTGAGAAGGCAAGAGTTGGAAGGACTAGAATTCTGGAAAATGAACATTCCAACCCTAGGTGGTATGAGTCTTTTCACATTTATTGTGCTCACATGGCTTCTAATGTAGTATTCACTGTGAAAGATGATAATCCTATTGGGGCAACCTTAATTGGAAGAGCATATGTGCCTGTTGAGGAGATCTTGGATGGCGATGAAATTGACAGATGGGTTGAAATTTTGGATGAGAACAAGAATCCTATACATGGTGATTCAAAGATTCATGTGAAGCTGCAATATTTTGATATCACAAAAGACCGCAACTGGGGCCGTGGTATTAGGAGTCTTAAATATCCTGGAGTTCCCTATACTTTCTTCTCACAAAGACAAGGATGTAAGATCTCTCTGTACCAAGATGCTCATATCCCAGACAATTTTGTTCCTAAAATACCTCTTGTTGGAGGTCAGAGATATGAGCCTCACAGATGTTGGGAGGATGTTTTTGATGCAATCACTAATGCGAAGCATTTAATATACATTACTGGCTGGTCTGTTTATACTGAGATTTCCTTGGTAAGGGATTCTAGGAGGCCCAAGCCTGGGGGAGAAACAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAAGGTGTCAGAGTTTTAATGCTTGTTTGGGATGATAGAACATCTGTTGGTTTGTTAAAAAAGGATGGATTGATGGCTACTCATGATGAAGAAACCGCGCATTACTTCGAGAACACTGATGTCCATTGTGTTTTATGCCCCCGCAATCCCGATGACGGGGGAAGCATTATTCAAGATTTGCAGATTTCCACCATGTTCACCCATCACCAGAAGATTGTGGTGGTGGATAGTGAGTTGCCAAGTGGAGGGTCAGATAAGCGAAGAATTGTTAGTTTTGTTGGGGGTATTGATCTTTGTGATGGAAGATATGATACTCCCTTCCATTCACTTTTCAGAACCTTAGACACAGCACACCATGATGACTTTCACCAACCTAACTTTCCTGGTGCTGCTATCACAAAAGGTGGTCCTAGGGAACCTTGGCATGACATCCACTCCCGACTTGAAGGACCCATTGCTTGGGATGTTTTGTTTAACTTCGAGCAAAGATGGAGGAAGCAAGGTGGGAAGGATCTACTTGTTCAGTTGAGAGAGCTTCAAGATGTCATTATTCCTCCATCCCCAGTTATGTTTCCTGATGATCATGAGACATGGAATGTTCAGTTATTTAGATCCATCGACGGTGGGGCTGCTTTTGGTTTTCCAGAGACTCCTGAAGATGCTGCCAAAGCTGGGCTTATTAGTGGAAAGGATAATATTATTGATCGTAGTATTCAAGATGCTTATATTAATGCCATTCGACGAGCAAAGAATTTTATCTATGTTGAAAATCAGTACTTCCTTGGAAGCTCTTATGCTTGGAGTGCTGATGATATCAAACCTGAGGACATCAATGCTTTGCATGTCATCCCAAAGGAGCTTTCACTTAAAATTGTTAGTAAGATTGAAGCTGGGGAAAGGTTCACAGTGTATATTGTGATCCCAATGTGGCCAGAGGGTGTCCCAGAAAGTGCATCAGTGCAGGCAATATTAGACTGGCAAAGGAGGACAATGGAAATGATGTACAAAGATGTTATTCAAGCACTCAGGGCCAAAGGACTTGAAGAAGATCCTCGGAACTATTTAACATTTTTCTGCCTTGGTAATCGGGAGGTGAAAAAGTCTGGAGAGTATGAGCCTTCTGAAAGACCTGATCCTGATTCAGATTATATGAGAGCCCAAGAGGCCCGACGTTTCATGATTTATGTTCATGCTAAGATGATGATAGTTGACGACGAATACATAATTGTTGGATCTGCCAACATCAACCAGAGATCTATGGATGGTGCCAGGGACTCTGAGATTGCCATGGGTGCTTATCAACCCTATCATTTGGCTCACAGGCAGCCTGCACGAGGTCAGATCCATGGTTTCCGCATGTCATTGTGGTATGAGCACCTTGGCATGCTTGATGAGTCCTTCCTCCATCCTGAAAGCGAAGATTGTATCAGGAAGGTGAATCAGATTGCTGACAAGTACTGGGATCTCTATTCAAGTGAGTCACTCGAACACGACCTTCCTGGACACCTGCTTCGCTACCCTGTTGGGATTGCCAGTGAAGGTGAAATCACAGAGCTGCCAGGATTTGAACATTTCCCTGACACCAAGGCTCATGTTCTTGGCGGCAAAGCTGACTACATGCCACCAATCCTTACAACTTAA 2424 0.4332 MAQILLHGTLHVTIFEVDRLKSGGGNIFSKLKENLEEAVGFGKGVTKLYATIDLEKARVGRTRILENEHSNPRWYESFHIYCAHMASNVVFTVKDDNPIGATLIGRAYVPVEEILDGDEIDRWVEILDENKNPIHGDSKIHVKLQYFDITKDRNWGRGIRSLKYPGVPYTFFSQRQGCKISLYQDAHIPDNFVPKIPLVGGQRYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGETTLGELLKKKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETAHYFENTDVHCVLCPRNPDDGGSIIQDLQISTMFTHHQKIVVVDSELPSGGSDKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVQLRELQDVIIPPSPVMFPDDHETWNVQLFRSIDGGAAFGFPETPEDAAKAGLISGKDNIIDRSIQDAYINAIRRAKNFIYVENQYFLGSSYAWSADDIKPEDINALHVIPKELSLKIVSKIEAGERFTVYIVIPMWPEGVPESASVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSERPDPDSDYMRAQEARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLAHRQPARGQIHGFRMSLWYEHLGMLDESFLHPESEDCIRKVNQIADKYWDLYSSESLEHDLPGHLLRYPVGIASEGEITELPGFEHFPDTKAHVLGGKADYMPPILTT 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1667 807 Pfam Phospholipase D C terminal 725 796 IPR024632 -
Dere12g1667 807 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 148 IPR035892 -
Dere12g1667 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 653 680 IPR001736 GO:0003824
Dere12g1667 807 CDD PLDc_pPLDalpha_1 200 377 - -
Dere12g1667 807 Gene3D Endonuclease Chain A 474 697 - -
Dere12g1667 807 Gene3D Endonuclease Chain A 199 442 - -
Dere12g1667 807 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Dere12g1667 807 SMART C2_3c 9 123 IPR000008 -
Dere12g1667 807 FunFam Phospholipase D delta 200 443 - -
Dere12g1667 807 PIRSF PLD_plant 1 807 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere12g1667 807 CDD PLDc_pPLDalpha_2 491 700 - -
Dere12g1667 807 SMART pld_4 653 680 IPR001736 GO:0003824
Dere12g1667 807 SMART pld_4 325 363 IPR001736 GO:0003824
Dere12g1667 807 SUPERFAMILY Phospholipase D/nuclease 444 736 - -
Dere12g1667 807 CDD C2_plant_PLD 2 147 - -
Dere12g1667 807 FunFam Phospholipase D 466 699 - -
Dere12g1667 807 SUPERFAMILY Phospholipase D/nuclease 150 445 - -
Dere12g1667 807 Pfam C2 domain 8 126 IPR000008 -
Dere12g1667 807 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 325 363 IPR001736 GO:0003824
Dere12g1667 807 Gene3D C2 domain 6 155 IPR035892 -
Dere12g1667 807 Pfam Phospholipase D Active site motif 325 363 IPR001736 GO:0003824
Dere12g1667 807 Pfam Phospholipase D Active site motif 654 680 IPR001736 GO:0003824
Dere12g1667 807 PANTHER PHOSPHOLIPASE D 4 795 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1667 Dere-ChrDere12 29162237 29165645 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1667 1 807 Phospholipase D Gene Family (Wang group) AT3G15730 81.852 0.0 1429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1667 12 29162237 29165645 Dere11g1765 11 31512713 31518203 CCT
Dere11g1765 11 31512713 31518203 Dere12g1667 12 29162237 29165645 ECH
Dere04g0561 04 5614550 5617483 Dere12g1667 12 29162237 29165645 ECH
Dere12g1667 12 29162237 29165645 Dere12g1667 12 29162237 29165645 ECH