Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1665 ATGGCGCAAATTTTGCTGCATGGGACTCTTCATGTCACGATCTTTGAGGTGGATAGGCTGGGTGGTGGCAATGTCTTCAGTGAGCTCAAGGAAAACCTTGAAGAGGCAATTGGTTTTGGAAAAGAAGCCACAAAACTCTATGCAACCATCGATATTGAGAAGGCCAGAGTTGGAAGAACTAGAATTCTGGAGAACGAAGATTCCAACCCTAGGTGGTATGAGTCTTTTCACATTTATTGTGCTCACATGGCTTCTGATGTTGTATTCACCGTGAAAGATGAAAATCTTATTGGCGCAACCTTAATTGGAAGAGCATATGTGCCTGTTGAGGAGATCTTGGATGGTGAGGAAGTAGACAAATGGGTTGAAATATTGGATGAGCAAAAGAACCCTATATATGGTCATTCAAAGATCCATGTGAAGCTGCAATATTTTGATGTCACAAAAGATCGTAACTGGGGTCAGGGAATTAAGAGTCCTAAATTTCCTGGAGTTCCTTACACATTCTTCTCACAAAGACAAGGATGTAAGATCTCTCTGTACCAAGATGCTCATATCCCAGACAATTTTGTCCCTAAAATACCTCTTGTTGGAGGTCAGAGATATGAGCCTCACAGATGTTGGGAGGATATCTTTGATGCAATCACTAATGCCAAGCATTTAATATACATTACTGGCTGGTCCGTTTATACTGAAATTTCCTTGGTAAGGGACTCTAGGAGGCCCAAGCCTGGGGGAGAAACAACACTTGGTGAGCTTCTCAAGAAAAAGGCAAGTGAGGGGGTTAGGGTTTTAATGCTTGTATGGGATAATGGTACATCCATTAGTTTCTTAAAGAATGCTGGATTGATGGCTACTCATGATGAAGAAACCAAGAATTACTTCGAGAATACAAACGTGTATTGTGTTTTATGCCCTCGTAATCCTGATGATGGGGCAAGCATGATTCAAGATGTGGTAATTTCCAAAATGCTCTCGCATCACCAGAAGTCTATGGTGGTGGACAGTGAGTTGCCAAGCGGAGGGTCAAACAAGCGAAGAATTGTTAGTTTCGTTGGAGGTATTGATCTTTGTGATGGAAGATATGATACCCCCTTCCATTCTCTTTTTAGAACCCTGGACACAGCACACCATAGTGACTTTCACCAACCCAACTTTGATGGTGCTGCAATCACAAAAGGTGGCCCTAGGGAACCTTGGCACGACATCCACTCTCGGCTTGAAGGACCCATTGCTTGGGACGTTTTGTTTAACTTTGAGCAAAGATGGAGGAAGCAAGGAGGGAAGGATTTACTTGTTCAGTTGAGGGAGCTGCAAGATGTCATTATTCCTCCATCCCCAGTTATGTTTCCTTATGATCACGAGACGTGGAATGTTCAGTTATTTAGATCCATTGATGGTGGGGATGCTTTTGGGTTTCCAGAGACTCCTGAAGATGCCACTAGAGCTGGGCTTATTAGTGGGAAGGATAACATTATTGACCGTAGTATTCAAGATGCTTATATTCATGCCATTCGACGTGCAAAGAATTTCATCTATATTGAAAATCAGTACTTCCTTGGAAGCTCTTATGCCTGGAGCGCTGATGATATCAAACCCGAGGACATCAATGCTTTGCATGTCATCCCGAAGGAGCTTTCACTTAAAATAGTTAGTAAGATTGAAGCTGGAGAAAGATTCACTGTGTATATTGTGATCCCAATGTGGCCAGAAGGAGCCCCAGAAAGTGGATCAGTGCAGGCAATATTGGACTGGCAGAGGAGGACAATGGAGATGATGTACAAAGATGTTATTCAAGCACTCAGGGCCAAAGGACTTGAAGAAGATCCTCGGAACTATCTAACATTTTTCTGCCTTGGTAATCGGGAGTTGAAGAAACCTGGAGAGTATGAGCCTTCAGAAAAACCAGAACCTGATTCAGATTATGTGAGAGCCCAAGAGGCTCGACGCTTCATGATCTATGTTCATGCCAAGATGATGATAGTCGATGATGAATACATAATCATAGGATCAGCCAATATCAACCAAAGATCAATGGATGGTGCTAGGGACTCTGAGATTGCCATGGGTGCATATCAGCCCTTTCATTTGGCTCACAAGCAGCCTGCACGAGGTCAGATCCATGGTTTTCGCTTGTCATTATGGTACGAACACCTTGGCCTACTTCAGGAGTCATTCCTGCATCCTGAAAGTGTAGAATGTGTCAAGGAGATGAACCAGATTGCTGACAAGTATTGGGATCTCTATTCAAGCAAGTCACTTGAACATGATCTCCCTGGACACCTGCTTCGCTACCCTGTTGGGATCTCCAATGACGGAGAAATTGTAGAGCTACCAGGATTTGAACATTTCCCTGACACCAATGCTCGTGTTCTTGGTGGCAAAGTTGACTACATGCCCCCAATCCTTACAACTTAA 2418 0.4342 MAQILLHGTLHVTIFEVDRLGGGNVFSELKENLEEAIGFGKEATKLYATIDIEKARVGRTRILENEDSNPRWYESFHIYCAHMASDVVFTVKDENLIGATLIGRAYVPVEEILDGEEVDKWVEILDEQKNPIYGHSKIHVKLQYFDVTKDRNWGQGIKSPKFPGVPYTFFSQRQGCKISLYQDAHIPDNFVPKIPLVGGQRYEPHRCWEDIFDAITNAKHLIYITGWSVYTEISLVRDSRRPKPGGETTLGELLKKKASEGVRVLMLVWDNGTSISFLKNAGLMATHDEETKNYFENTNVYCVLCPRNPDDGASMIQDVVISKMLSHHQKSMVVDSELPSGGSNKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHSDFHQPNFDGAAITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDLLVQLRELQDVIIPPSPVMFPYDHETWNVQLFRSIDGGDAFGFPETPEDATRAGLISGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSYAWSADDIKPEDINALHVIPKELSLKIVSKIEAGERFTVYIVIPMWPEGAPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNRELKKPGEYEPSEKPEPDSDYVRAQEARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPFHLAHKQPARGQIHGFRLSLWYEHLGLLQESFLHPESVECVKEMNQIADKYWDLYSSKSLEHDLPGHLLRYPVGISNDGEIVELPGFEHFPDTNARVLGGKVDYMPPILTT 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1665 805 Pfam Phospholipase D C terminal 724 794 IPR024632 -
Dere12g1665 805 Pfam C2 domain 9 124 IPR000008 -
Dere12g1665 805 SUPERFAMILY Phospholipase D/nuclease 482 735 - -
Dere12g1665 805 FunFam Phospholipase D 464 697 - -
Dere12g1665 805 PANTHER PHOSPHOLIPASE D 4 793 IPR015679 -
Dere12g1665 805 Pfam Phospholipase D Active site motif 652 678 IPR001736 GO:0003824
Dere12g1665 805 Pfam Phospholipase D Active site motif 324 361 IPR001736 GO:0003824
Dere12g1665 805 FunFam Phospholipase D delta 198 441 - -
Dere12g1665 805 PIRSF PLD_plant 1 805 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Dere12g1665 805 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 651 678 IPR001736 GO:0003824
Dere12g1665 805 SMART pld_4 323 361 IPR001736 GO:0003824
Dere12g1665 805 SMART pld_4 651 678 IPR001736 GO:0003824
Dere12g1665 805 SMART C2_3c 9 121 IPR000008 -
Dere12g1665 805 CDD C2_plant_PLD 2 145 - -
Dere12g1665 805 ProSiteProfiles C2 domain profile. 1 122 IPR000008 -
Dere12g1665 805 Gene3D C2 domain 6 155 IPR035892 -
Dere12g1665 805 Gene3D Endonuclease Chain A 197 440 - -
Dere12g1665 805 Gene3D Endonuclease Chain A 473 694 - -
Dere12g1665 805 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 147 IPR035892 -
Dere12g1665 805 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 323 361 IPR001736 GO:0003824
Dere12g1665 805 CDD PLDc_pPLDalpha_2 489 698 - -
Dere12g1665 805 SUPERFAMILY Phospholipase D/nuclease 148 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1665 Dere-ChrDere12 29149050 29153223 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1665 1 805 Phospholipase D Gene Family (Wang group) AT3G15730 78.765 0.0 1379