Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1662 ATGGCAAGTACCTTTCTGTGGAATGATCCATATATTGCTGTAAATCACCAAACTCTCTGTAACTTACCATCACCTCTCTCTCACTCATTCTCAGTTCTGAAGCTTCTGACAGAGATGGTCCAATCAAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCCTGGGTTTCTGAGATTCGTCACCCACTACTGAAGAGGAGGGTGTGGCTTGGTACATTTGAAAGTGCTGAAGAGGCAGCTAGAGCATATGATGAAGCAGCCATTTTGTTGAGTGGCAGAAACGCCAAAACCAACTTCCCAATCTCCAGTAATCAAAAAGGAAAGCAGTACAGTTCTTCTGTTACTTCTTTTTCTTCTTCTTCTTCTTCCACAACTATGTCTTCAATCATCAGTGCAAAGCTTCGTAAATGCTGCAAATACCCATCGCCTTCTCTCACTTGCCTGAGGCTTGACGCTGAGAATTCTCACATTGGAGTGTGGCAGAAGCGAGCAGGGTCTCACTCAGACTCAAGCTGGGTGATGATGATTGAACTAGAAAGAAAGAACCATGCAGCTTCTGAGTCAGGATTGCCAGCGGAAGAAGCACCGGAGAAGCTAAAACCACAAGATGGCAATGATGGGTTGGATGAAGAGCAAACAATCGCCTTGCAGATGATAGAAGAACTTCTCAACAGAAATTAA 681 0.4493 MASTFLWNDPYIAVNHQTLCNLPSPLSHSFSVLKLLTEMVQSKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFESAEEAARAYDEAAILLSGRNAKTNFPISSNQKGKQYSSSVTSFSSSSSSTTMSSIISAKLRKCCKYPSPSLTCLRLDAENSHIGVWQKRAGSHSDSSWVMMIELERKNHAASESGLPAEEAPEKLKPQDGNDGLDEEQTIALQMIEELLNRN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1662 226 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Dere12g1662 226 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Dere12g1662 226 MobiDBLite consensus disorder prediction 183 211 - -
Dere12g1662 226 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Dere12g1662 226 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Dere12g1662 226 MobiDBLite consensus disorder prediction 100 123 - -
Dere12g1662 226 MobiDBLite consensus disorder prediction 183 207 - -
Dere12g1662 226 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Dere12g1662 226 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 41 184 - -
Dere12g1662 226 SUPERFAMILY DNA-binding domain 42 102 IPR016177 GO:0003677
Dere12g1662 226 FunFam Ethylene-responsive transcription factor 2 42 101 - -
Dere12g1662 226 CDD AP2 42 102 IPR001471 GO:0003700|GO:0006355
Dere12g1662 226 Pfam AP2 domain 42 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1662 Dere-ChrDere12 29129095 29129893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1662 39 226 AP2-EREBP Transcription Factor Family AT1G15360 64.824 2.18e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g1662 AP2 2e-12 CL0081