Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1620 ATGGGTGGCACTTCATTGGCGGGCGTGCAAGACCACATCAAATTGGCGAGAGACTACGCTGTTGAAGGACTCTACGATACCTCTATCATCTTCTTCGATGGCGCAGTTGCTCAGATCAACAAGCACCTAAGCAGTGTTGATGATCCTTTAGTTCGTACAAAATGGATGAATGCTAAGAAAGCCATTTCTGAGGAAGCAGAAGTTGTAAAGCAACTAGATGCAGAGAGAAGGGCTTTTAAAGAAACTCCCACTGGCAGACGTCCCCCTTCACCTCCAATATCTACTAAATCATCATTTGTTTTTCAACCATTGGATGAGTATCCAACTTCATCAAGTGGTCCCATGGATGATCCTGATGTATGGAGGCCACCCAGTAGAGATAATACAAGTAGAAGACCCACAAGGCCTGGTCAAGTGGGTACTCGGAAGTCACCACAAGATGGGACTTGGGCTCGAGGTTCTACACGAACAGGTACTACTGGGCGTGGTGCAAAGAGTAGTGCTACAAGTAGGGTTAACTCAGGAGCTCGGGCATCAACTACGGGAAAGAAAGGCACTGGTTCTGGAAAGTCTAGCAAGGCAGATTCAGTTAATGGTGATGCTGAAGATGGTAAGTCAAAGAAAGGGCAATATGAGGGTCCTGATCCTGATTTGGCTGAGATGCTTGAAAGGGATGTGTTAGAAACATCTCCTGGCGTGAGATGGGATGATGTTGCTGGGCTGACTGAAGCGAAAAGACTTCTAGAAGAAGCTGTTGTGCTGCCGTTGTGGATGCCTGAATATTTCCAGGGAATTAGGAGACCATGGAAAGGTGTTCTGATGTTTGGTCCTCCAGGAACTGGGAAGACACTGCTAGCTAAAGCTGTTGCCACTGAATGTGGGACCACTTTCTTCAATGTATCTTCTGCTACTTTAGCTTCAAAATGGCGTGGAGAGAGTGAGCGCATGGTGCGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATCTTCATTGATGAGATTGATTCTCTATGCAATGCTCGAGGGGCATCCGGGGAGCATGAATCATCTAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAATACTTCCACAAATGAAGATGGTAGCCGTAAAATAGTGATGGTTTTAGCAGCCACTAACTTCCCATGGGACATAGATGAGGCACTAAGGAGAAGACTGGAAAAGCGTATATATATTCCCCTACCAAATTTTGAGAGCCGTAAAGAGCTAATACGGATCAATTTGAAGACTGTAGAGGTGGCTGCTGATGTAAATATTGATGAAGTGGCTCGCCGAACAGAGGGCTACAGTGGAGATGATCTGACGAATGTCTGTCGGGATGCTTCTTTGAATGGTATGAGACGTAAGATTGCAGGAAAGACTCGGGACGAGATCAAGAACATGTCAAAGGATGAGATTTCAAAGGATCCAGTTGCCATGTGTGATTTTGAAGAAGCTTTGGCTAAGGTTCAACGAAGTGTTTCTCAAGCTGACATTGAACGCCATGAGAAGTGGTTTGCTGAATTTGGGTCCGCATAA 1563 0.4549 MGGTSLAGVQDHIKLARDYAVEGLYDTSIIFFDGAVAQINKHLSSVDDPLVRTKWMNAKKAISEEAEVVKQLDAERRAFKETPTGRRPPSPPISTKSSFVFQPLDEYPTSSSGPMDDPDVWRPPSRDNTSRRPTRPGQVGTRKSPQDGTWARGSTRTGTTGRGAKSSATSRVNSGARASTTGKKGTGSGKSSKADSVNGDAEDGKSKKGQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAADVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALAKVQRSVSQADIERHEKWFAEFGSA 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1620 520 MobiDBLite consensus disorder prediction 196 216 - -
Dere12g1620 520 CDD Kp60-NTD 7 75 - -
Dere12g1620 520 FunFam Katanin p60 ATPase-containing subunit A1 230 398 - -
Dere12g1620 520 Gene3D - 410 496 - -
Dere12g1620 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 517 IPR027417 -
Dere12g1620 520 Pfam ATPase family associated with various cellular activities (AAA) 272 409 IPR003959 GO:0005524|GO:0016887
Dere12g1620 520 Gene3D - 3 80 - -
Dere12g1620 520 PANTHER AAA DOMAIN-CONTAINING 25 519 - -
Dere12g1620 520 FunFam Katanin p60 ATPase-containing subunit A1 4 80 - -
Dere12g1620 520 Gene3D - 230 511 IPR027417 -
Dere12g1620 520 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 520 IPR028596 GO:0008017|GO:0008568|GO:0051013
Dere12g1620 520 SMART AAA_5 268 411 IPR003593 GO:0016887
Dere12g1620 520 ProSitePatterns AAA-protein family signature. 381 400 IPR003960 GO:0005524|GO:0016887
Dere12g1620 520 Pfam AAA+ lid domain 431 472 IPR041569 -
Dere12g1620 520 MobiDBLite consensus disorder prediction 130 195 - -
Dere12g1620 520 MobiDBLite consensus disorder prediction 91 109 - -
Dere12g1620 520 MobiDBLite consensus disorder prediction 78 216 - -
Dere12g1620 520 Pfam Vps4 C terminal oligomerisation domain 473 518 IPR015415 -
Dere12g1620 520 FunFam Katanin p60 ATPase-containing subunit A1 410 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1620 Dere-ChrDere12 28686888 28690897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1620 224 512 Calmodulin-binding Proteins AT3G56690 39.933 1.59e-51 187