Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1617 ATGACGAAACTACCCACATGTTCTGAGGAACAGTCAACAGGGTTTAGAGAAATCCCTGTAGAAGAATTCGTTTTATGGGGGATTTGTGGGATAACCTGTAAGAACAATATGGTTCACATGAGAGGGTCACAACATGAGTGTCTGTATTTGCTAAATCTTGTAGACATGAAGAAAGAAAACATTGGCACTTTGGAAGCTGGAGAGCTCCCTGGTCGGTTGACTCGTGCACGAGCAGCTGCTTTTCGTGCATCTGGACAGCTGCCTCCTCTCAAGGAGCCAACACAACAAAATCAGAAGCTATCGCGAGCTAACTCAAAAAGAGCAGCTTCTGATAAAGAATGTCTTCAGCGCAAAAAGAGGGCTGTTCTTCGGGATGTCACCAATGTCGCCAATGTTTTCTGTGAAAACTCATACAAGAACTGTTTCAATGCTACCAAAGTACAGGCTAAGAAAAGCAAGCTGGCTGAGACTGGTCAAGTTAATAATTCCAAAGAGATTCCTTCAGTTTCTGTGGAGTTACGACAGCTTCAAGTTGACTCAAAATCAGGGGGTTTACCTGAAAGAGGACTTGTATCAGAAGATGCTACGTGTTCAAGTAATTTGAAAGACAATTCCCTCCATCAGCCTAGCAACAACAAAATTTGTGGCATATATGATACTTTGCTTGGAGGTCAGACACCTGGATTATGTCCTCAGCCGCTAATTTCTCAAATGAAAGCAAAGAGAGGTAGCCTTTCTGAACTTGTAAGTGCATCAATGAATCCAGATATCACTGATATAGATGCTGATGACGATGATCCTCAACTATGCAGCGTCTATGCAGCTGATATATATGACAACTTACGTGTTTCTGAGCTTGCAAGAAGACCTTGTCCTAACTTTATGCAGACAGTTCAGCGAGATATCACTCAAAGCATGCGTGGGATATTAGTTGATTGGCTTGTAGAGGTTTCTGAGGAATACAAATTGGTTCCAGATACTCTTTACCTCACCGTATATCTCATAGATTGGTTTCTCTCCAAAAATTACATAGAAAGACAAAGACTTCAGCTGCTTGGCATCACCTGCATGCTAATTGCATCGAAGTATGAAGAAATTTGTCCCCCTCGAATTGAAGAATTCTGCTTCATCACAGACAACACGTACACCAAAGAGGAGGTACTTAAAATGGAGACTCAAGTGTTGAAGTGCTCCCAATTTCAACTATTTGCTCCCACTACAAAAACTTTCCTCAGGAGGTTTCTTCGAGCAGCGCAAGCCTCTTACAAGAGCCCTAGCCTTGAATTGGAATACCTGGCCAATTATCTAGCTGAGCTAACCCTGATGGACTATGGCTTCTCGAGTTTCCTACCATCTATCAGTGCTGCATCAGCTGTATTTCTTGCCAAATGGACATTAGATCAGTCATATCACCCATGGAATCCAACTCTTGAACACTATACAAGTTACAAAGCATCAGATTTGAAATCCTCAATTCTTGCATTGCAAGATCTGCAGCTCAATACCAATGGCTGCCCTTTAAGCGCCATTCGCATGAAGTACAGGCAAGACAAGTTTAAGAGTGTAGCAGCTATGTCTTCACCAAAAGTGCTGGAGACTCTTCCATATGCAATAGGCATTACAGTATTTTCACCACTGAGGCAAAGACGAGGAGTATGTGGCGTCTAA 1668 0.4245 MTKLPTCSEEQSTGFREIPVEEFVLWGICGITCKNNMVHMRGSQHECLYLLNLVDMKKENIGTLEAGELPGRLTRARAAAFRASGQLPPLKEPTQQNQKLSRANSKRAASDKECLQRKKRAVLRDVTNVANVFCENSYKNCFNATKVQAKKSKLAETGQVNNSKEIPSVSVELRQLQVDSKSGGLPERGLVSEDATCSSNLKDNSLHQPSNNKICGIYDTLLGGQTPGLCPQPLISQMKAKRGSLSELVSASMNPDITDIDADDDDPQLCSVYAADIYDNLRVSELARRPCPNFMQTVQRDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVYLIDWFLSKNYIERQRLQLLGITCMLIASKYEEICPPRIEEFCFITDNTYTKEEVLKMETQVLKCSQFQLFAPTTKTFLRRFLRAAQASYKSPSLELEYLANYLAELTLMDYGFSSFLPSISAASAVFLAKWTLDQSYHPWNPTLEHYTSYKASDLKSSILALQDLQLNTNGCPLSAIRMKYRQDKFKSVAAMSSPKVLETLPYAIGITVFSPLRQRRGVCGV 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1617 555 PANTHER CYCLINS 208 514 IPR039361 -
Dere12g1617 555 Gene3D - 276 524 - -
Dere12g1617 555 CDD CYCLIN_AtCycA-like_rpt2 405 519 - -
Dere12g1617 555 SUPERFAMILY Cyclin-like 265 402 IPR036915 -
Dere12g1617 555 SMART cyclin_7 409 497 IPR013763 -
Dere12g1617 555 SMART cyclin_7 312 396 IPR013763 -
Dere12g1617 555 MobiDBLite consensus disorder prediction 83 112 - -
Dere12g1617 555 FunFam Mitotic cyclin 6 290 390 - -
Dere12g1617 555 FunFam Cyclin A1 392 524 - -
Dere12g1617 555 SMART Cyclin_C_2 405 528 IPR004367 -
Dere12g1617 555 SUPERFAMILY Cyclin-like 405 530 IPR036915 -
Dere12g1617 555 Gene3D - 290 403 - -
Dere12g1617 555 MobiDBLite consensus disorder prediction 89 104 - -
Dere12g1617 555 Pfam Cyclin, C-terminal domain 405 527 IPR004367 -
Dere12g1617 555 Pfam Cyclin, N-terminal domain 276 402 IPR006671 -
Dere12g1617 555 CDD CYCLIN_AtCycA_like_rpt1 267 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1617 Dere-ChrDere12 28643956 28654773 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1617 56 534 Core Cell Cycle Gene Families AT1G80370 56.289 9.22e-175 500