Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1615 ATGTTGTGCACAGTCTGGTCACAGTCTTCATTTTCAGGTTCAAACACACAACTCAACTCCAACCTTAAACCGTACGTTGTAGCAGCTTACGAACGGGAATTTCGAAGCAGACAGTCCCCAAGTCTGAACGTTGAAACGACGCCACGCAGGTCAAACATGTCACCGGAGAATCAATCCGACGACGTCCTTGAGCTGAACCACAAGGACACAGAGCTCACCTTGGGTCTCCCCGGTGCCAAAACCGGCACGAAACGTGGCTTCTCCGAGACCGTTGATCTTAATCTTGGAGGAACCGAAGGCGAATCTGAAAAATCACAAGGCAGTAATGGTCCTGGCTCAGCCTCAGCCAAACCTTCCGCACCAAAGGCACAGATGGTGGGGTGGCCGCCTGTGAGGGCCAGTAGAAAGAGCGTGATGAAGAGGTGCAAGTACGTGAAGGTGGCGGTGGATGGAGCTCCATATCTCAGAAAAGTGGATCTTGAAATTTATCGGAGTTATGAGGAGCTTCTACGGGCATTGGAGACTATGTTTTGCTGCTTAACTAGCCGCAATGATTTGAATGAGAGGAAGCTCATAATGGACAGTGGAAATAATGGAGTGGAATACGTGCCTACCTATGAGGACAAAGATGGTGACTGGATGATGGTAGGAGACGTACCATGGAAGATGTTTGTTGAATCATGCAAGAGAATAAGGTTAATGATAAGCTCAGAAGCCATTGGCTTAGCACCAAGAACATCTTCAAGTTCAAAGTGA 756 0.4828 MLCTVWSQSSFSGSNTQLNSNLKPYVVAAYEREFRSRQSPSLNVETTPRRSNMSPENQSDDVLELNHKDTELTLGLPGAKTGTKRGFSETVDLNLGGTEGESEKSQGSNGPGSASAKPSAPKAQMVGWPPVRASRKSVMKRCKYVKVAVDGAPYLRKVDLEIYRSYEELLRALETMFCCLTSRNDLNERKLIMDSGNNGVEYVPTYEDKDGDWMMVGDVPWKMFVESCKRIRLMISSEAIGLAPRTSSSSK 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1615 251 MobiDBLite consensus disorder prediction 99 115 - -
Dere12g1615 251 Pfam AUX/IAA family 139 245 IPR033389 -
Dere12g1615 251 MobiDBLite consensus disorder prediction 36 60 - -
Dere12g1615 251 MobiDBLite consensus disorder prediction 36 127 - -
Dere12g1615 251 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 65 241 IPR003311 GO:0005634|GO:0006355
Dere12g1615 251 FunFam Auxin-responsive protein 137 246 - -
Dere12g1615 251 ProSiteProfiles PB1 domain profile. 142 238 IPR000270 GO:0005515
Dere12g1615 251 SUPERFAMILY CAD & PB1 domains 134 235 - -
Dere12g1615 251 Gene3D - 137 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1615 Dere-ChrDere12 28637254 28638803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1615 145 239 B3 DNA Binding Superfamily AT2G46530 31.579 2.14e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere12g1615 AUX_IAA 1.1e-55 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1615 12 28637254 28638803 Dere12g1615 12 28637254 28638803 ECH