Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1614 ATGGCAAAGGAAGGTCTTGGACTTGAAATCACAGAGCTAAGGCTGGGTCTGCCGGGGAGGGAGGAGAAGAATGATAAGAAGAGGATGTTCTCGGAGATTGAAGATGATGGAGATGACCAGAACAGCTCCTCCGGTGACCGGAAAATCATGCCGACGACGAAGAACCAAGTGGTGGGGTGGCCGCCGGTGTGCTCCTACCGGAAGAAGAATAGTTTGAACGAAGGGTCGAAAATGTACGTGAAAGTAAGCATGGATGGAGCTCCTTTCTTGCGTAAAATTGATTTGGATAAGCATAAGGGATATTTAGAGCTAGCTATGGCTTTGGAGAAGCTCTTTGATTGCTATGGAATCAAGGAGGCGTTGAAGGACGCAGACAAGTGCGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTATTGAGTCCTGCAAGAGGCTGAGGGTCATGAAGAAATCTGATGCAAAGGGATTTATAGAAGGCGTGACAAAGTGA 528 0.4754 MAKEGLGLEITELRLGLPGREEKNDKKRMFSEIEDDGDDQNSSSGDRKIMPTTKNQVVGWPPVCSYRKKNSLNEGSKMYVKVSMDGAPFLRKIDLDKHKGYLELAMALEKLFDCYGIKEALKDADKCEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRVMKKSDAKGFIEGVTK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1614 175 Gene3D - 72 174 - -
Dere12g1614 175 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 167 IPR003311 GO:0005634|GO:0006355
Dere12g1614 175 Pfam AUX/IAA family 38 169 IPR033389 -
Dere12g1614 175 FunFam Auxin-responsive protein 72 173 - -
Dere12g1614 175 MobiDBLite consensus disorder prediction 17 43 - -
Dere12g1614 175 MobiDBLite consensus disorder prediction 17 50 - -
Dere12g1614 175 SUPERFAMILY CAD & PB1 domains 70 162 - -
Dere12g1614 175 ProSiteProfiles PB1 domain profile. 77 163 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1614 Dere-ChrDere12 28626759 28629939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1614 6 172 B3 DNA Binding Superfamily AT4G23980 30.769 6.38e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere12g1614 AUX_IAA 4.2e-45 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere11g1718 11 30905307 30907973 Dere12g1614 12 28626759 28629939 CCT
Dere12g1614 12 28626759 28629939 Dere12g1614 12 28626759 28629939 ECH