Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1613 ATGGATGTTACCTCTCTGGAACAAAATAGAAACATCCAAACCGACTTATATCCTTTGCTGATGGAGCAGCCAGAAAGCCACCATCAGCATGTAATTGACATCACAAGGAATGGTGATGCTTCATCCAGCTCATCTCATGTTGATCAACATCCTGAAATACATTTAGTACAGAATGAAGATCAACAGTCTAGTGGTACACAAGTCCCTACTCATCAAACATCTTCCTCATCCAGAATAAACTCTAGAAATTCCTCATCAACAAGAGGTGAGGGGTATCGTCACCGTAGAAGGAGCCCCTTAAATTCTGGACTATGGATATCAGTTGAGCTTGTTGTCACTGTGAGTCAGATCATAGCATCTATTGTCATCTTGTCATTATCAAGGAATGAAAATCCACAAGCCCCATTATTTGCATGGGTTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCTATTCTATATTGGCGTTATCGAAGCCATAATCAAAGTACTGAACAAGATATGTCTCAACAATCTCAAGGATCTTCTGGAAGTAATCCTCCACTACCTACCTCATATACTGCTATCTCTGATGCTCATGTTTCAGATGAGGAGAATAGTCATGCGACAAGAAACACTAGGATTCCTGGAGCTTTTCTTTCTAGGCTTAATGGATTAGTAGATCATTTCAAGATGGCCATAGATTGTTTCTTTGCAGTTTGGTTTGTTGTGGGCAATGTGTGGATCTTTGGAGGCCACTCTTCTCCTTCAGATGCTCCAAAATTGTATAGGTTATGTATAGTGTTTCTCACATTTAGCTGCATTGGATATGCTATGCCATTTATCCTATGTGCAACAATTTGTTGCTGCCTACCTTGCATAGTTTCTGTTTTTGGCATTCGGGAGGATTTTTCTCAGACTAGAGGCGCAACAGTAGAGTCTATTAACGCTCTTCCAATCTACAAGTTCAAATTGAAGAAAATTGAGGATAGCAATGGTCGGGATGTCAACACAGCTACAGATGAAGGTGGGATCTTTGCTGCAGGGACAGAAAAGGAGCGGGCCATATCCGGAGAAGACGCTGTTTGTTGTATTTGCTTGGCGAAATATGCAGACGATGATGATCTTAGGGAGTTACCCTGTTCTCATTTCTTCCACGTGGAGTGTGTTGACAAATGGTTGAAGATAAACGCATCATGTCCTCTTTGTAAAAGTGATGCTGGCAAGATCAGTGGAGGGTCACCTTCAGCCAGGGACTCCAGTTAG 1248 0.4199 MDVTSLEQNRNIQTDLYPLLMEQPESHHQHVIDITRNGDASSSSSHVDQHPEIHLVQNEDQQSSGTQVPTHQTSSSSRINSRNSSSTRGEGYRHRRRSPLNSGLWISVELVVTVSQIIASIVILSLSRNENPQAPLFAWVVGYASGCVATLPILYWRYRSHNQSTEQDMSQQSQGSSGSNPPLPTSYTAISDAHVSDEENSHATRNTRIPGAFLSRLNGLVDHFKMAIDCFFAVWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIVSVFGIREDFSQTRGATVESINALPIYKFKLKKIEDSNGRDVNTATDEGGIFAAGTEKERAISGEDAVCCICLAKYADDDDLRELPCSHFFHVECVDKWLKINASCPLCKSDAGKISGGSPSARDSS 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1613 415 SMART ringv_2 356 398 IPR011016 GO:0008270
Dere12g1613 415 MobiDBLite consensus disorder prediction 57 87 - -
Dere12g1613 415 SUPERFAMILY RING/U-box 350 404 - -
Dere12g1613 415 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 400 - -
Dere12g1613 415 ProSiteProfiles Zinc finger RING-type profile. 357 398 IPR001841 -
Dere12g1613 415 SMART ring_2 357 397 IPR001841 -
Dere12g1613 415 FunFam E3 ubiquitin-protein ligase 340 406 - -
Dere12g1613 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 404 IPR013083 -
Dere12g1613 415 MobiDBLite consensus disorder prediction 57 97 - -
Dere12g1613 415 Pfam Ring finger domain 357 398 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1613 Dere-ChrDere12 28614131 28616356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1613 1 408 C3H Transcription Factor Family AT1G80400 58.072 1.40e-170 482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1613 12 28614131 28616356 Dere12g1613 12 28614131 28616356 ECH