Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1596 ATGGATGATACCAAGGATGATGCAAGGTATCCCCCTAATATTTATGGAGTTAATCACCATCAAGGTTATGGCTATTTGAATCATCAGATACATCCAGTTAGGAGTTCTCCATATTCTCAGCCAGTCACAAATGAGTATGCTGAAGATAATAATGATGATGAGGACGAAGAAGCTGTGGAACAGTTAGGAGAGGAGGAAGAAGATGATGATGATGATCAAAGTAATAGTATTCATCCATCAAAAGATGCTGGCGACGATATTGATGAGGAAGATGACGAGAGTGGAGATGAGGATGAAAATGATGCTAACAATGACGATAAGGATGATGATGACAACGACGATAAGCAGAGAAGTTACAGCAAGAGAGTTCAAGAGGATTCAGAATGGCACCCGAAAAAGCGAAAGCTGAAAAGCTTGATTTCAGCTTATGAATTTGCCCCTCGTGTAACAGCAGCTCACTCAGCCCCAAAACCATCTTTTGGTGGTAGGAATTCCCTTACTGACTGGACTGAACATGAGACATTTGTTCTTCTTGATGCTTGGGGTGACCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGGTCTGAGCAATGGCAAGAAGTTGCAGAAAAAGTAACAGAAGTTTCGAAGATTGAAAGGACAGATACTCAGTGTAGGAATCGTCTAGACACATTAAAGAAAAAATACAAAAAGGAGAAAACTAAATTAGCAGAACTTGGTGGTGGATCAAGCAAATGGGTCTATTTTAAAAGGATGGATAAGCTATTGTCTTCTCCGCCACAGCATGCTGGTCTCTCTTGTGGTTTGGATTCAGGAGAGTTTGTTTTTATGAACCCTAGAGTTTATTTGAACCGTGCAAATAGGTTAGATGAAATGAGGGATAGTCCAGGGAATTCAGAATCTGCTGGTGAAGAAGATTTCGATGGACTTCATCCAAAGAAAAGAAGGTATGGCGGAGACAGTAATGAAACTTCTTCCTTCAGATTGCTTGCTGATTCCATTCAGAAATTCAGTGAGATATATGAGAAGATTGAAATTAGTAAAAGGCAGCAGATGGTGGAATTGGAAAAGATGAGGATGGATTTCCATAAAGAATTGGAAGCACAGAAGAAGCAGATATTAGAGAGAGTGCAGTGTGAGATTGCAAAACTACAGCAGAGAGATGATGAGCAGAATGATGATTCTGTTGAGAAGGATGTGTAA 1203 0.4023 MDDTKDDARYPPNIYGVNHHQGYGYLNHQIHPVRSSPYSQPVTNEYAEDNNDDEDEEAVEQLGEEEEDDDDDQSNSIHPSKDAGDDIDEEDDESGDEDENDANNDDKDDDDNDDKQRSYSKRVQEDSEWHPKKRKLKSLISAYEFAPRVTAAHSAPKPSFGGRNSLTDWTEHETFVLLDAWGDRFLQHGRKSLRSEQWQEVAEKVTEVSKIERTDTQCRNRLDTLKKKYKKEKTKLAELGGGSSKWVYFKRMDKLLSSPPQHAGLSCGLDSGEFVFMNPRVYLNRANRLDEMRDSPGNSESAGEEDFDGLHPKKRRYGGDSNETSSFRLLADSIQKFSEIYEKIEISKRQQMVELEKMRMDFHKELEAQKKQILERVQCEIAKLQQRDDEQNDDSVEKDV 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1596 400 MobiDBLite consensus disorder prediction 110 134 - -
Dere12g1596 400 MobiDBLite consensus disorder prediction 1 20 - -
Dere12g1596 400 Gene3D - 169 231 - -
Dere12g1596 400 MobiDBLite consensus disorder prediction 292 322 - -
Dere12g1596 400 MobiDBLite consensus disorder prediction 26 134 - -
Dere12g1596 400 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 157 392 IPR044823 -
Dere12g1596 400 MobiDBLite consensus disorder prediction 47 73 - -
Dere12g1596 400 Pfam Myb/SANT-like DNA-binding domain 168 255 IPR044822 -
Dere12g1596 400 ProSiteProfiles Myb-like domain profile. 169 226 IPR001005 -
Dere12g1596 400 MobiDBLite consensus disorder prediction 85 109 - -
Dere12g1596 400 MobiDBLite consensus disorder prediction 292 321 - -
Dere12g1596 400 MobiDBLite consensus disorder prediction 32 46 - -
Dere12g1596 400 Coils Coil 352 394 - -
Dere12g1596 400 FunFam trihelix transcription factor ASIL2 169 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1596 Dere-ChrDere12 28458545 28459747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1596 169 400 Trihelix Transcription Factor Family AT1G54060 32.727 1.24e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Dere12g1596 Myb_DNA-bind_4 1.2e-22 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1596 12 28458545 28459747 Dere12g1596 12 28458545 28459747 ECH