Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1584 ATGTACAGTGATCGTGCTGCAACCTTCGAAGAAAACTTAATAACAGAAGACAGCTTTGATATTCAGATCAATGTCTTTCAACATACGTTTGATACAACACAACCAATACATATAATAACATCTCCTCCAGTGTTTCAAGATCTTCATATTATGCCTTGTGAAGAACTGCTCGAAGATGTTCCCAGATTCCTTCGACCTCGTTTGTCGCGCTTTCTTTCCTTCAACGAACTTCAATACTTGGCTTCACATATTATCTTCTATGCTCGATCAATAGTCCAAGATCGTCCTACAACCTTAGAAAGTACCAGTCGTAGGTTGTTACGTTTGATCGTAGACGTTCTAGTTCAAGAAGATCCAAACATGGTTACTTACAGAGTCACAGAACAATCCATGCAACAATGTTCAATGGTTCCAGCAACAGAGGAAGCAATAGCATCACTCAGAAAGCTGAAAGTGGCTAATGATGAAGCTAAGGAAGAACAGTGCAGTATTTGCTTAGAGAATTTTGAAGACGACGACGAAGTTTCTGCAATGCCATGTGATCATGTCTATCACAAGAATTGCATTGTAGACTGGCTGAAAACAAGTCATGTATGCCCATTGTGTCGTTTTCAAATGCCTGTAGAATAA 630 0.3937 MYSDRAATFEENLITEDSFDIQINVFQHTFDTTQPIHIITSPPVFQDLHIMPCEELLEDVPRFLRPRLSRFLSFNELQYLASHIIFYARSIVQDRPTTLESTSRRLLRLIVDVLVQEDPNMVTYRVTEQSMQQCSMVPATEEAIASLRKLKVANDEAKEEQCSICLENFEDDDEVSAMPCDHVYHKNCIVDWLKTSHVCPLCRFQMPVE 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1584 209 ProSiteProfiles Zinc finger RING-type profile. 162 203 IPR001841 -
Dere12g1584 209 SMART ringv_2 161 203 IPR011016 GO:0008270
Dere12g1584 209 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 208 IPR013083 -
Dere12g1584 209 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 86 207 - -
Dere12g1584 209 SMART ring_2 162 202 IPR001841 -
Dere12g1584 209 SUPERFAMILY RING/U-box 154 207 - -
Dere12g1584 209 Coils Coil 140 160 - -
Dere12g1584 209 Pfam Ring finger domain 161 203 IPR001841 -
Dere12g1584 209 CDD RING-H2_PA-TM-RING 161 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1584 Dere-ChrDere12 28331830 28332459 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1584 125 209 C3H Transcription Factor Family AT1G18760 35.294 1.11e-16 73.9