Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1578 ATGACCAAAACTCTTCAACCTTCTGTTCTACTCCTTTCTCTCCTATTCATCATCCAAATTGGCATCTCTGAAGCCGATGACATTGCCGTTTACTGGGGACAAGACGGTAAGGAGGGTAATCTTACAGAAACATGTGCAGCAGGAAGATACTCTTTTGTAATCATAGGCTTCCTTAACAGCTTTGGGAATGGCCAATCCCCTCAACTCAACCTTGCAGGTCACTGTGACCCTTCTTCATCTGGTTGCGCCTTCGTTGGCACTGAAATCAAATATTGTCAAAATCAAGGGACCAAGGTGATGCTTTCTCTTGGAGGAGGAGTAGGGAAGTACACCCTAGCTTCCTCTAATGATGCTCAGAATCTTTCTGATTACCTATGGAGCAATTTCTTAGGTGGAAGTGCATCTTCACGTCCCCTTGGTGATGCCATATTAGATGGCATAGATTTTGATATAGAGGCATCCACTCCATACTTGGAGGATCTTGCACGTTACCTCAACTCTCATAGCACTGTAGGACAAAAAGTGTACCTGACTGCAGCACCTCAATGCCCATTTCCTGATTCTTATCTTGGAACTGCCCTCGATTCAGGTCTTTTTGACTATGTATGGGTACAATTCTACAACAATCCTCCGTGTGGTTATACAGAAACCAATGCTGACCACTTTGTGAGTGCATGGGACCAATGGGCGACATCATTAAAAGGGGCGAAAATATTCTTGGGGTTGCCAGCTTCTCCAGAAGCATCTGTCTACGGCTATGTTCCTACTGATTTGTTAATCTCTAAAGTACTTCCTATTGTAAAGAAGTCACCTAACTACGGAGGTATAATGTTGTGGTCAAGGTACTATGATAAACTGAGTGGATACAGTACATCCATTCAAATTAGTCCTCTGTGCACACAGCAAATCCCTCCTCCCAAATGCAGGAGCCATGATAGTGGCTTTGTAGAACGTTTTGGTTACATGTCAACAGATAGTTTTAAGGTTTACGAAAGTGAGAACCTTGGTGCACAGTGCTGTGAGATCATATGCATGAACAATTGTTCATGTGACGCTTATGCACCAGTGAACCAGGTTAACAACACTGGTTGCCAGATATGGGGTAAAGGAACCGGGTTCACCGAAGCTGCTGGGGCAAAAGGGCAGTCAATCTATGTTGTTAAACACAAAGTAAACAGGTGGTGGATATGGCTTATCATTGGGGTAGGAGCAACCATAGCATTACCTCTGATATGCTACTTATGCTTTGCCTCATGGAGAAAATACAGAGCAGAAGTGGATAGAAAAATGAAGCAAAAGACGATATTACATGAAATTGGAGGTAATGCAATGCTTTCCATGGTGTATGGCAAAGCCAAAAGGAATAAGAAACAAGGAAAGGCAAGCAATGAGGTTGAAATATTCAGTTTTGAGAGCATTGCAGCTGCCACGAACAATTTTTCAGCTTCCAATAAGCTAGGAGAGGGCGGTTTTGGTCCAGTTTATAAGGGAACACTACCTGATGGGCAAGAGGTAGCAATAAAGCGACTTTCTAAAAGTTCTGGACAAGGGCTAACAGAGTTTAAAAATGAGGCTAAACTCATGGCCAAACTTCAACACACTAATCTTGTGAGGCTTTTAGGGTTCTGCATCCAGAGAGATGAAAGAATATTAGTTTATGAGTACATGTCCAACAAGAGCTTAGACTTCTACCTATTTGATGCAAGCAGAAGGAATGTTCTAGACTGGGATAAACGGTTTAACATAATTGAAGGAATTGCCCAAGGACTACTCTATCTACACAAATATTCAAGGCTAAAAGTGATACATCGTGACCTGAAGGCAGGCAATATATTACTTGATGAAGAAATGAATCCAAAAATATCTGATTTTGGCATGGCTCGAATATTTGGTCTAAGAGGATCTGAAGAAAACACAAATAGAATAGTTGGCACATATGGTTATATGTCTCCAGAATATGCAATGAATGGCATTGTGTCGATCAAAACAGATGTATTCAGCTTTGGTGTATTGTTACTAGAGATCCTTAGTGGCAAAAAGAATAATAATAGCTATGATTCAGATCGTCCACTCAATCTCATAGGATATGCATGGCAGCTCTGGAATGAAGGTAAAGCTTTAGAGCTAGTAGACTCAACATTAAAAGAACCAAGTGCTCAAAACAAAGTGCTGAGAAGTATTCACATTGGCCTATTGTGCGCACAAGATCAAGCAACGGATAGACCTTCCATGATAGATGTTGTTTCTTTTCTATCAAATGAAACTATCCAACTTGGCCAACCCAAGCAGCCAGCATTCTTTATCAGTGCAGTTTTGGAAGAGTCAGATTTACGTAACAGCAGGCGAGACTATCATTCCATAAATAATGTAACAATATCTACTGTGAATGGTAGATGA 2397 0.4122 MTKTLQPSVLLLSLLFIIQIGISEADDIAVYWGQDGKEGNLTETCAAGRYSFVIIGFLNSFGNGQSPQLNLAGHCDPSSSGCAFVGTEIKYCQNQGTKVMLSLGGGVGKYTLASSNDAQNLSDYLWSNFLGGSASSRPLGDAILDGIDFDIEASTPYLEDLARYLNSHSTVGQKVYLTAAPQCPFPDSYLGTALDSGLFDYVWVQFYNNPPCGYTETNADHFVSAWDQWATSLKGAKIFLGLPASPEASVYGYVPTDLLISKVLPIVKKSPNYGGIMLWSRYYDKLSGYSTSIQISPLCTQQIPPPKCRSHDSGFVERFGYMSTDSFKVYESENLGAQCCEIICMNNCSCDAYAPVNQVNNTGCQIWGKGTGFTEAAGAKGQSIYVVKHKVNRWWIWLIIGVGATIALPLICYLCFASWRKYRAEVDRKMKQKTILHEIGGNAMLSMVYGKAKRNKKQGKASNEVEIFSFESIAAATNNFSASNKLGEGGFGPVYKGTLPDGQEVAIKRLSKSSGQGLTEFKNEAKLMAKLQHTNLVRLLGFCIQRDERILVYEYMSNKSLDFYLFDASRRNVLDWDKRFNIIEGIAQGLLYLHKYSRLKVIHRDLKAGNILLDEEMNPKISDFGMARIFGLRGSEENTNRIVGTYGYMSPEYAMNGIVSIKTDVFSFGVLLLEILSGKKNNNSYDSDRPLNLIGYAWQLWNEGKALELVDSTLKEPSAQNKVLRSIHIGLLCAQDQATDRPSMIDVVSFLSNETIQLGQPKQPAFFISAVLEESDLRNSRRDYHSINNVTISTVNGR 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1578 798 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 144 152 IPR001579 GO:0004553|GO:0005975
Dere12g1578 798 CDD GH18_hevamine_XipI_class_III 27 293 IPR045321 -
Dere12g1578 798 Gene3D Glycosidases 26 296 - -
Dere12g1578 798 ProSiteProfiles Protein kinase domain profile. 480 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1578 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 601 613 IPR008271 GO:0004672|GO:0006468
Dere12g1578 798 SMART serkin_6 480 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1578 798 FunFam Acidic endochitinase SE2 26 296 - -
Dere12g1578 798 SUPERFAMILY (Trans)glycosidases 25 293 IPR017853 -
Dere12g1578 798 SUPERFAMILY Protein kinase-like (PK-like) 463 769 IPR011009 -
Dere12g1578 798 CDD STKc_IRAK 486 751 - -
Dere12g1578 798 Gene3D Phosphorylase Kinase; domain 1 452 555 - -
Dere12g1578 798 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 302 IPR001223 GO:0005975
Dere12g1578 798 Pfam Protein tyrosine and serine/threonine kinase 482 751 IPR001245 GO:0004672|GO:0006468
Dere12g1578 798 Pfam Glycosyl hydrolases family 18 28 284 IPR001223 GO:0005975
Dere12g1578 798 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 341 796 - -
Dere12g1578 798 Pfam PAN-like domain 326 369 IPR003609 -
Dere12g1578 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 446 555 - -
Dere12g1578 798 Pfam Domain of unknown function (DUF3403) 753 798 IPR021820 GO:0004674
Dere12g1578 798 Gene3D Transferase(Phosphotransferase) domain 1 556 763 - -
Dere12g1578 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 556 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1578 Dere-ChrDere12 28281699 28285161 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1578 468 774 Receptor kinase-like Gene Family AT3G45860 59.547 8.61e-127 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Dere12g1578 PK_Tyr_Ser-Thr 1.4e-47 CL0016