Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1569 ATGTCATCACCGTCTCCAGCAACCAACTCCGCCTTCCCACCTCCTCTTCCGCAGCCTACAACCATCAAAGAGATTTCTCTTCCGGCGCCCTTAAACACTACAACTCCGAGTGGTTCCACCACGTCACCACCGCCGCCGCCGCTGTCGCTGACGCCGTCTTCTTCATCGGCTGGGGGGCTGTCGAGGGCGACAAAGGAAATGGAAAAGGATGAAGGATATGATATGGAAAATAATTCCGCTGCTCCTCCACAAAAACCCAAAGCTGACCAATTTGGTAGTCCTCCTCAGCAGCGGCAACCGACTAAGCCTCCTTCAACAGTTGTTAAAGCAACATTGCCTCCAAAACCAACTCCAACATCTGGATTTGGGTCGAATCAGGAACTGTCATCTATGAGTGTTTCCACTCTACCTGTGCTGTCTTCAACGAGCAGTAGTTTGGGGTCTGAGAGGCCATGTCTTGCAGCATCACCAGGCATTGCACTGGGACTATCACAAAGCGCATTTACATATGAAGAGTTAGCAGTAGCAACGGATGGTTTCTCTAACTTAAATCTTCTTGGACAAGGTGGTTTTGGCTATGTTCATAAAGGAATTCTCTCAAATGGAAAAACTGTTGCAATCAAGAAGCTGAAATCTGGGAGTGGACAGGGGGAGCGTGAGTTCCAGGCAGAAGTTGAGGTCATTAGTCGTGTCCATCACAAACATCTTGTCTCCCTTGTTGGATACTGCATGGCTGGGGCCCAGAGGATGCTTGTTTATGAGTTTCTGCCCAATGATACTCTGGAATTTCATTTGCATGGAAAGCACAGACCAACTATGGACTGGTCAACAAGGATGAAGATTGCTATTGGATCAGCAAAAGGATTGGCTTATCTGCATGAGGACTGTCAGCCCAAAATCATACACCGTGACATCAAGGCATCTAACATTCTTCTTGATAATTATTTTGAGGCAAAGGTAGCAGATTTTGGACTTGCTAAATTTTCATGGGATACTGATACGCATGTCTCTACTCAAGTAATGGGAACTTTTGGATACTTGTCTCCTGAATATGCTGCTAGTGGAAAACTCACTGAGAAGTCAGATGTCTTCTCCTTTGGCATTGTGCTTTTGGAGTTGATTACTGGACGAAAACCTGTTGATAAAACTGAGGCATTCATAAATGACAGCATGGTTGAATGGGCAAGACCTTTGCTATCCCAAGCTTTGGAAAATGGCACCTTTGATGCTCTTGCTGATCCAAGGTTGCAGAAGAATTACAACTCTGATGAGATGCTTCGAATGATTGCTTGTGCTGCAAATTGTGTGCGCCATTCAGCCAGGCGTCGGCCTCAAATGAGTCAGGTGGTACGAGCTCTAGAAGGAAATATGACCCTGGATGATCTAATTGAAGGGAGCACAGTGGGGCAAGGCAGGGTATTTGGTTCCTTTGAGAATTCAAGTTATGATAGTGGCCAGTACAGTGAGTACAGTGAGGACCTAAAGAAGTTCAGGAAGCTAGTACTAGAAGGCCAAGAGCAACACACCACTGAGTACAGTGGACCCAGCAGTGAGTACGGTCAGCATCCATCTGCCTATAGCAGTTCAGGCCGGCAACCTACCTAG 1605 0.4673 MSSPSPATNSAFPPPLPQPTTIKEISLPAPLNTTTPSGSTTSPPPPPLSLTPSSSSAGGLSRATKEMEKDEGYDMENNSAAPPQKPKADQFGSPPQQRQPTKPPSTVVKATLPPKPTPTSGFGSNQELSSMSVSTLPVLSSTSSSLGSERPCLAASPGIALGLSQSAFTYEELAVATDGFSNLNLLGQGGFGYVHKGILSNGKTVAIKKLKSGSGQGEREFQAEVEVISRVHHKHLVSLVGYCMAGAQRMLVYEFLPNDTLEFHLHGKHRPTMDWSTRMKIAIGSAKGLAYLHEDCQPKIIHRDIKASNILLDNYFEAKVADFGLAKFSWDTDTHVSTQVMGTFGYLSPEYAASGKLTEKSDVFSFGIVLLELITGRKPVDKTEAFINDSMVEWARPLLSQALENGTFDALADPRLQKNYNSDEMLRMIACAANCVRHSARRRPQMSQVVRALEGNMTLDDLIEGSTVGQGRVFGSFENSSYDSGQYSEYSEDLKKFRKLVLEGQEQHTTEYSGPSSEYGQHPSAYSSSGRQPT 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1569 534 MobiDBLite consensus disorder prediction 97 111 - -
Dere12g1569 534 MobiDBLite consensus disorder prediction 1 128 - -
Dere12g1569 534 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 129 500 IPR047117 -
Dere12g1569 534 Gene3D Phosphorylase Kinase; domain 1 162 255 - -
Dere12g1569 534 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672|GO:0006468
Dere12g1569 534 MobiDBLite consensus disorder prediction 506 534 - -
Dere12g1569 534 SUPERFAMILY Protein kinase-like (PK-like) 163 454 IPR011009 -
Dere12g1569 534 ProSitePatterns Protein kinases ATP-binding region signature. 186 209 IPR017441 GO:0005524
Dere12g1569 534 FunFam proline-rich receptor-like protein kinase PERK1 158 255 - -
Dere12g1569 534 FunFam Proline-rich receptor-like protein kinase PERK1 256 464 - -
Dere12g1569 534 Pfam Protein tyrosine and serine/threonine kinase 184 453 IPR001245 GO:0004672|GO:0006468
Dere12g1569 534 SMART serkin_6 180 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1569 534 ProSiteProfiles Protein kinase domain profile. 180 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1569 534 Gene3D Transferase(Phosphotransferase) domain 1 256 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1569 Dere-ChrDere12 28196615 28200942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1569 140 502 Trihelix Transcription Factor Family AT1G70460 60.163 4.19e-157 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Dere12g1569 PK_Tyr_Ser-Thr 2.4e-47 CL0016