Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1560 ATGGCCATGAACATGTCCAATAATAATCAACCTCCCCCTTCTCACTCTCAAGACCTCTTTCCCTCCCCTGCTCTCTCTCTCAGCCTTGCTGGAATCTTTCGCCATGCCAGGATGGCGGCGATCGAGGCGGACGTGGAAGAGGGGGAGGAGGGTAGCGGAGGAGGTGGGCGGCGAGACAACACTGTTGAGATTAGCAGCGAGAACTCTGGCCTCATTGGAAGATCATCGAGATCAGACGACGGTTTCGAAGTAGAAGGTGAGCATGATGAGGAGGATGTTGAAGGTGATGGAGGAGACAAGAAAAAGAATAAGAAGAAGAGGAAGACATATCATAGGCACACTGCTGAGCAGATCAGAGAGATGGAAGCGCTTTTCAAAGAGTCGCCACATCCCGATGAGAAGCAGAGGCAACAACTTAGCAAGCGATTAGGTCTTGCTCCTAGACAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCTTTACAAGAGCGTCATGAAAACTCATTGCTGAAATCAGAAATGGATAAGCTTAGAGAGGAAAATGAGGCCATGAGAGAGACCATAAACAAAGCTTGTTGCGCCAACTGTGGCGTGGCCACCACCTGCTCAGATACTGCCATGCCTACTGCAGAACATCAACTACGTATAGAAAATGCCAAACTCAAAGCTGAGATTGAGAAGCTTCGAGCAGCATTAGGAAAACGCCCACGGGGATCGACAACGTCACCTTCCAGCTCTACGGGCAATGAGGAGATAGAGAATAGAAGCAGTCTGGAATCTTACAGTGGAATTTTTGGACTTGAGAAGACAAAGATAATGGAGCTAGTTAATCAAGCAGTGGAAGAGCTCGTAACGATGGCTACTATGGGCGAACCACTATGGGTTCGCAGCGTTGAGACTGGTCGTCAAATACTTAACTACGATGAATACGTAAAAGAGTTCAAAGTTGTAAGTTCGAGCAGTAATGGAAAGTCAAAGAGATCCATCGAAGCCTCTAGAGAAACTGGGGTTGCTTTCGTGGATCTCCCTCGTCTTCTTCAAACCTTCTTGGACGTGAATCAATGGAAGGAAATGTTTCCATGCTTAATATCAAAGGCAGCAACTGTTGATGTCATTTGCAGCGGCGAAGGTGCTAACAGGAATGGCGCGGTGCAACTGATGTTTGCTGAGCTGCAAATGCTGACACCAATGGTGGCGACTAGAGAAGTGTATTTTGTGAGGCATTGCAAGCAATTGAATGCAGAAAAGTGGGCAATCGTTGATGTATCGATAAACAAAGAAGAAGAAAATACTGAGGCCTCTCTCAGATGCAGAAAACGACCGTCCGGTTGCATCATTGAGGATATGTCAAATGGCCACTGCAAGATACTATGGGTGGAGCACTTGGAATGCGAGAGAAGCACAGTTCACAAAATTTATCGAACCGTCGTGAATAGTGGCCTCGCCTACGGAGCAAGGCACTGGCTTGCCACTGTACAACTCCAATGCGAACGCCTCGTCTTCTTCATGGCAACAAATGTTCCCTTGAAGGATTCCACAGGTGTTGGGACGCTGGCTGGGAGGAAGAGCGTATTGAAGTTGGCTCAGAGAATGACAAGAAGTTTCTGCCACGCCGTTGGGGGTTCAAGCTTCCATTCATGGACCAAGTTTACTGGTGAGAATGGAGAAGACATGAGGGTTAGTTCGAGGAAGAACTTGAATGACCCCGGGGAGCCTCTTGGAGTGATCTTGTGTGTGGTTTCTTGCGCATGGCTTCCGGTCTCACAGAATGTTATTTTTGATTTCTTGAGGGATGAAGCTCGCCGAACCGAGTGGGATATGACAACTGACGGCGAGTCTGTGCAATCTATTGCAAATTTAGCCAAAGGACAAGATCGGGGCAATGCAGTAACAATCCAGGCACTAAAGGTAAAAGATAGCAGCAACAGTACGTGGATTCTGCAAGATAGCTGCACAAATGCTTACGAATCAATGGTGGTGTATGCTCCTGTGGACATCACTCGCATGCAGTCTGTGATCACAGGCTGTGACTCGAGCAACGTCCCCATTCTGCCCTCAGGATTCTCCATTCTCCCTGATGGACTCGAGGCAATAAGGCCATTGGTGATCACTTCGAGGCAGGAAGAGAAGAGCACAGAAGGAGGGTCCTTGCTTACTATGGCATTCCAGGTCCTTGTTAGCACTTCTCCCACTGCTAAGCTAACCCAGGAGTCTGTTGAATCAGTCAGTACTGTTATGTCTTGTACATTGAGAAATATCAGAACAGGTTTACAGTGTGAGGATTGTTGA 2298 0.4765 MAMNMSNNNQPPPSHSQDLFPSPALSLSLAGIFRHARMAAIEADVEEGEEGSGGGGRRDNTVEISSENSGLIGRSSRSDDGFEVEGEHDEEDVEGDGGDKKKNKKKRKTYHRHTAEQIREMEALFKESPHPDEKQRQQLSKRLGLAPRQVKFWFQNRRTQIKALQERHENSLLKSEMDKLREENEAMRETINKACCANCGVATTCSDTAMPTAEHQLRIENAKLKAEIEKLRAALGKRPRGSTTSPSSSTGNEEIENRSSLESYSGIFGLEKTKIMELVNQAVEELVTMATMGEPLWVRSVETGRQILNYDEYVKEFKVVSSSSNGKSKRSIEASRETGVAFVDLPRLLQTFLDVNQWKEMFPCLISKAATVDVICSGEGANRNGAVQLMFAELQMLTPMVATREVYFVRHCKQLNAEKWAIVDVSINKEEENTEASLRCRKRPSGCIIEDMSNGHCKILWVEHLECERSTVHKIYRTVVNSGLAYGARHWLATVQLQCERLVFFMATNVPLKDSTGVGTLAGRKSVLKLAQRMTRSFCHAVGGSSFHSWTKFTGENGEDMRVSSRKNLNDPGEPLGVILCVVSCAWLPVSQNVIFDFLRDEARRTEWDMTTDGESVQSIANLAKGQDRGNAVTIQALKVKDSSNSTWILQDSCTNAYESMVVYAPVDITRMQSVITGCDSSNVPILPSGFSILPDGLEAIRPLVITSRQEEKSTEGGSLLTMAFQVLVSTSPTAKLTQESVESVSTVMSCTLRNIRTGLQCEDC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1560 765 Gene3D - 94 177 - -
Dere12g1560 765 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 104 760 IPR042160 -
Dere12g1560 765 MobiDBLite consensus disorder prediction 1 22 - -
Dere12g1560 765 SUPERFAMILY Homeodomain-like 99 165 IPR009057 -
Dere12g1560 765 Coils Coil 214 234 - -
Dere12g1560 765 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Dere12g1560 765 MobiDBLite consensus disorder prediction 240 258 - -
Dere12g1560 765 FunFam Homeobox-leucine zipper protein HDG1 94 180 - -
Dere12g1560 765 SMART START_1 277 501 IPR002913 GO:0008289
Dere12g1560 765 CDD homeodomain 111 162 IPR001356 GO:0003677
Dere12g1560 765 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Dere12g1560 765 SMART HOX_1 106 168 IPR001356 GO:0003677
Dere12g1560 765 MobiDBLite consensus disorder prediction 59 75 - -
Dere12g1560 765 FunFam Homeobox-leucine zipper protein GLABRA 2 277 500 - -
Dere12g1560 765 Pfam Homeodomain 107 162 IPR001356 GO:0003677
Dere12g1560 765 SUPERFAMILY Bet v1-like 270 501 - -
Dere12g1560 765 Coils Coil 163 197 - -
Dere12g1560 765 ProSiteProfiles START domain profile. 268 504 IPR002913 GO:0008289
Dere12g1560 765 MobiDBLite consensus disorder prediction 43 116 - -
Dere12g1560 765 Pfam START domain 279 501 IPR002913 GO:0008289
Dere12g1560 765 Gene3D - 276 497 IPR023393 -
Dere12g1560 765 SUPERFAMILY Bet v1-like 531 739 - -
Dere12g1560 765 CDD START_ArGLABRA2_like 272 500 - -
Dere12g1560 765 MobiDBLite consensus disorder prediction 233 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1560 Dere-ChrDere12 28137876 28144129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1560 64 765 Homeobox Transcription Factor Family AT1G79840 61.918 0.0 887
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dere12g1560 START 1.4e-53 CL0209