Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1553 ATGATGGCCGGAAACCCTAACTGGTGGAGCATGCATCCACCATCTTTGATCCCTCCTCAGTATGTGCTTGGATCTTCCTCAATTCCTATGAATTTCTTCACTGAAACCCAAGAAACCCCTCAGTCATGGAGCCAAATGCTTTTCGCTGGGTTACCTGGAGAAGAAGACAGAATGGGGTTGAATCATTTTCAGAGCAAAAAGTTGGAAAATTGGGAAGACCAGATTCTTAATCATCCATCCTCAAGAACAGCTCCTGTCGTTGATGTAATAAAACAAGAGGTTTCCCAAAGTGGCAACTTTTACGGCCATGGGCGTGAGGAGTTTCCGGCTTCTGCACCTCATGGGTCATATTGGTTAACCAATATGGCGCCACCAGTTATTTCTAATTCTTCCCCTAAGTCTCGTGGCATCACTGGCATAAGTAATCCTAATGTTTTGGATTTCTCTTATAACAAGCCAGATCATAGCAAGAATCAACTACCACATAACCCGTCCGAGTGTAATAATAGCACAGCCTCCACTGGAGTTTGTAATAAGAAGGCTAGGGTCCAGCCATCTCCAAGCCAACCTCCTCTCAAGGTGAGAAAGGAGAAACTAGGCGATAGAATAACAGCCCTTCACCAGCTAGTTTCCCCATTTGGAAAGACTGACACAGCTTCTGTCTTGCTAGAAGCCATTGGATATATTAGATTCCTTCAAGGTCAAATTGAGGCACTCAGTTCCCCTTACTTGTCCAATGCATCGAAAAACATAAGGAATCAACACTCTGTACATGGAGAAAGGAATTCTGTGTTTCCTGAGGACCCGGGTCAGCTGTTGAATGACACTGGCCTGAAAAGAAAAGGAGCTTCAAACCAGGATGGAGAAGAAAAGCCGAAGAACTTGAGGAGTAGAGGGTTGTGCTTGGTGCCTGTGTCTTGCACCCAACATGTTGGAAGTGAAATTAATGGAGCTGATTACTGGGCACCAGCTTATGGCAGCGGATTTTAG 990 0.4505 MMAGNPNWWSMHPPSLIPPQYVLGSSSIPMNFFTETQETPQSWSQMLFAGLPGEEDRMGLNHFQSKKLENWEDQILNHPSSRTAPVVDVIKQEVSQSGNFYGHGREEFPASAPHGSYWLTNMAPPVISNSSPKSRGITGISNPNVLDFSYNKPDHSKNQLPHNPSECNNSTASTGVCNKKARVQPSPSQPPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLSNASKNIRNQHSVHGERNSVFPEDPGQLLNDTGLKRKGASNQDGEEKPKNLRSRGLCLVPVSCTQHVGSEINGADYWAPAYGSGF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1553 329 CDD bHLH_AtbHLH_like 193 240 IPR045239 -
Dere12g1553 329 MobiDBLite consensus disorder prediction 258 295 - -
Dere12g1553 329 FunFam Transcription factor bHLH123 family 193 256 - -
Dere12g1553 329 MobiDBLite consensus disorder prediction 148 173 - -
Dere12g1553 329 Gene3D - 193 257 IPR036638 GO:0046983
Dere12g1553 329 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 62 310 - -
Dere12g1553 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 245 IPR036638 GO:0046983
Dere12g1553 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1553 Dere-ChrDere12 28017035 28020097 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1553 1 272 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 39.017 2.45e-44 153