Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1551 ATGGAAATCTCTGAAAAGAGCTCTTGTCTTAACTTGAAGGAGACAGAGCTCAGACTTGGGCTTCCTGGGAGTCAGTCTCCAGAGAGAAAATCAGCAGGTGGGGTATCTCTGTTTGGGAAGGATTTGCAGAACAGTAAGGCTTTGAAGAATGTCATTGCTGGGGCTAAGAGAGGCTTTTCTGATGCTATCAATGATGGGTCTTCAAGGAAATGGGTTTTCTCTTTAAGTGATGGATCTGAAGCCATTGATGGTTTACAAGGTAAAAAGAATAATACCCAGAAGCCATGTCAATCTGCCAAACCAGTCCAGGATGAGAAGCCTGAGGTTGCTGCAACAAATGAACATGCTAGTGCTCCCTCTGCAAAGGCACAGGTTGTGGGATGGCCACCGATTCGATCTTTCCGGAAAAACACGTTGGCCTCTAGTTTGACAAAGAATAACGATGAAGAAGCAGAGGAAAAACCTGGATCATGTGGTTGTCTCTATGTGAAAGTTAGTATGGATGGTGCTCCATATCTCAGAAAGGTTGATCTCAGAACTTACACCAACTATACGCAACTTTCTTCAGCTCTTGAGAACATGTTCACCTGCTTCACCATCGGTCAATGCAATTCTGGTGGATTTCCTGGAAAAGATGGCCTAAGTGAGAGCTCTTTGAGGGATCTTCTTCGTGGGTCTGAATATGTTCTTACATATGAAGATAAGGATGGAGATTGGATGCTTGTTGGTGATGTCCCGTGGGAGATGTTCATTGAATCATGTAAGAGACTAAGGATCATGAAAGGTTCCGAGGCAATCGGGCTAGCTCCAAGGGCCGTGGAAAAATCCAGGAGCCAAAACTAG 843 0.4472 MEISEKSSCLNLKETELRLGLPGSQSPERKSAGGVSLFGKDLQNSKALKNVIAGAKRGFSDAINDGSSRKWVFSLSDGSEAIDGLQGKKNNTQKPCQSAKPVQDEKPEVAATNEHASAPSAKAQVVGWPPIRSFRKNTLASSLTKNNDEEAEEKPGSCGCLYVKVSMDGAPYLRKVDLRTYTNYTQLSSALENMFTCFTIGQCNSGGFPGKDGLSESSLRDLLRGSEYVLTYEDKDGDWMLVGDVPWEMFIESCKRLRIMKGSEAIGLAPRAVEKSRSQN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1551 280 Gene3D - 156 274 - -
Dere12g1551 280 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 267 IPR003311 GO:0005634|GO:0006355
Dere12g1551 280 MobiDBLite consensus disorder prediction 84 122 - -
Dere12g1551 280 MobiDBLite consensus disorder prediction 85 99 - -
Dere12g1551 280 ProSiteProfiles PB1 domain profile. 160 262 IPR000270 GO:0005515
Dere12g1551 280 FunFam Auxin-responsive protein 156 272 - -
Dere12g1551 280 SUPERFAMILY CAD & PB1 domains 160 261 - -
Dere12g1551 280 Pfam AUX/IAA family 14 271 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1551 Dere-ChrDere12 27995300 27997643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1551 149 270 B3 DNA Binding Superfamily AT4G23980 27.642 3.72e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere12g1551 AUX_IAA 1.2e-93 CL0072