Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1541 ATGACACAACTCACTGAATCATCCTCTTCTGAAACTGCTAGCACCTCTTCTGCATCTTCCTCATCTTCCAGTTCCGAACCCCACAAACCTGAACCCAAAGTAAACTCAGAACAGAGCAGACCTGCAAAGAGACCTAGAGACTCTTCGTCTTCTTCTTCTTCGTCGTCGTCGTCTTCCACCAAGCACCCACACTACCATGGGGTCCGAATGCGAAGTTGGGGCAAATGGGTCTCCGAAATCCGCGAGCCCCGCAAGAAATCTCGCATCTGGCTCGGCACTTTCGCTACCCCAGAAATGGCGGCACGAGCCCACGACGTTGCGGCTTTGACCATTAAAGGTAAATCAGCCATTCTCAACTTTCCTCAAATTGCCGGCGTGCTGCCCAGGCCCGCCACGTGCACCCCACGTGACATCCAAGCCGCCGCATCTGCCGCGGCCGCCATGGTTAAATTCGACCCTGTACGGTCGTCGGAACAGTCGGAATCGTCGGAGGAGCTGAGTGAGATAGTGGAATTGCCTAACTTAGAAGAAGAGAGCTTGGACTCGGCCGAGTCGAGGACCGAGTTCATATGGATCGACTCGTTGGATAGTTGGGTGTTTCCGTGCATGGGTTCGGAGGAGGTAGAATGGAGCTCCATTTTCTCTGAGCAATTTGCAGACGAGATTCCACTTTGGAATTAA 681 0.5316 MTQLTESSSSETASTSSASSSSSSSEPHKPEPKVNSEQSRPAKRPRDSSSSSSSSSSSSTKHPHYHGVRMRSWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALTIKGKSAILNFPQIAGVLPRPATCTPRDIQAAASAAAAMVKFDPVRSSEQSESSEELSEIVELPNLEEESLDSAESRTEFIWIDSLDSWVFPCMGSEEVEWSSIFSEQFADEIPLWN 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1541 226 SMART rav1_2 64 127 IPR001471 GO:0003700|GO:0006355
Dere12g1541 226 MobiDBLite consensus disorder prediction 45 63 - -
Dere12g1541 226 MobiDBLite consensus disorder prediction 1 29 - -
Dere12g1541 226 Gene3D AP2/ERF domain 64 123 IPR036955 GO:0003700|GO:0006355
Dere12g1541 226 SUPERFAMILY DNA-binding domain 64 121 IPR016177 GO:0003677
Dere12g1541 226 MobiDBLite consensus disorder prediction 30 44 - -
Dere12g1541 226 FunFam Ethylene-responsive transcription factor 2 64 122 - -
Dere12g1541 226 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 47 182 - -
Dere12g1541 226 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Dere12g1541 226 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Dere12g1541 226 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Dere12g1541 226 ProSiteProfiles AP2/ERF domain profile. 64 121 IPR001471 GO:0003700|GO:0006355
Dere12g1541 226 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Dere12g1541 226 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1541 Dere-ChrDere12 27926107 27926787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1541 33 201 AP2-EREBP Transcription Factor Family AT5G11590 51.295 5.79e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere12g1541 AP2 2.1e-13 CL0081