Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1539 ATGGCATCCCATTTGGGCCTTCTTTGTACTTTTATGGTCATTTTCTTGGCTGCCATGAATGCTTCAGTTGAAGCTGCAAGACTATTCAAAGTTGGTGATGGCTTCGGTTGGCAAGAACCTCCCCCTAACAACACAGCATTTTATTCCCAGTGGGCTGCAATGAACAACTTTCATGTTGGAGATTCTTTGGCTTTTGAGTACCAGAATGACTCAGTTAATAGTGTGGACAAATGGGATTACTATCACTGTGACTCGAGTAACCCCATCTCTGTCTTCAACAATGGGAAGAGCATTATCGGTCTTGACCAGCCTGGCTCCTTCTACTTCATCAGTGGGATTGATGATCACTGCAGGAACGGCCAGAGATTGATGGTGGAGGTCATGTCCTTGCTACCTATCTCACCATCTTCACCGTCCGTTTCTGCTCCTTCAAATTCTCATAACTCGGGGGTTTCACTCTCAGTGGTTCTTAGTACTTGTTTTTCCTTTATGTCGATTGCTTTTGGAGTCTGTTTTGTCTAG 522 0.4464 MASHLGLLCTFMVIFLAAMNASVEAARLFKVGDGFGWQEPPPNNTAFYSQWAAMNNFHVGDSLAFEYQNDSVNSVDKWDYYHCDSSNPISVFNNGKSIIGLDQPGSFYFISGIDDHCRNGQRLMVEVMSLLPISPSSPSVSAPSNSHNSGVSLSVVLSTCFSFMSIAFGVCFV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1539 173 FunFam Early nodulin-like protein 1 26 131 - -
Dere12g1539 173 SUPERFAMILY Cupredoxins 26 128 IPR008972 -
Dere12g1539 173 Gene3D - 25 130 IPR008972 -
Dere12g1539 173 CDD OsENODL1_like 27 128 IPR041846 -
Dere12g1539 173 Pfam Plastocyanin-like domain 44 121 IPR003245 GO:0009055
Dere12g1539 173 ProSiteProfiles Phytocyanin domain profile. 27 129 IPR003245 GO:0009055
Dere12g1539 173 PANTHER BLUE COPPER PROTEIN 27 142 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1539 Dere-ChrDere12 27905490 27906245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1539 5 130 Phytocyanin Superfamily AT1G79800 53.968 4.32e-45 145