Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1534 ATGTTAATGGAAGTGCCGGAGTACTTTGTCGGTGGCTATTTTGGAGCCGCAGGTGACCAATACTCGCAGGACAAGCGGCACGCTGGTGACCAGAAGCCCGGAGAGCCCTTTGCCATTGACGACCTCCTTGACTTCTCCAACGCGGACGCTATGATCATGTCCGACGGTTTCTTCGAAAATGCCGCCGGAAACTCCACCGACTCCTCCACTGTCACCGTCGTTGACAGCTGCAATTCCTCAATTTCCGGCGGGGACAACCATTTCTCCTCCGGCCACGTTGGCTCCCGCGGCTTCGGCGATCCTCAATTCTCCGGAGAACTCTGCGTTCCGTATGACGACTTGGCTGAACTGGAATGGCTATCGAACTTCGTGGAAGACTCATTCTCAGCCCAAGATCATGAGCTAAAAACACTACACCTCCTCTCCGGCGCCACCGTTTGCCCCATTTCTACTAAACCTCAGACACCAGAGTCCTCCTCTTCCTCCGAAACGCTTCCACCATTTGCTGCCGACACCGCTCGAAACGCACTGCTTTTCCACCCGGAAACTCCGCTTCCAGGTAAAGCTCGGAGCAAGCGTTCACGCGCCGCTCCCGGGGACTGGTCCACGCGCCTCCTCCACCTGATCACGCCGACGGCCGCACCGGAACCGGCGCAAGCTAAGGCGGCGTCGGCAAAGAAACGAGAGAGTTCGAATTCGGAGTCTTCGGGTCGGAAATGCCTGCATTGCGCCGTAGAGAAAACTCCACAATGGCGTACTGGACCCATGGGTCCGAAGACGCTGTGCAATGCTTGCGGAGTGCGGTACAAGTCCGGGAGGCTGGTTCCGGAGTACCGACCAGCGGCGAGCCCGACGTTTGTGTTGGCGAAGCACTCCAATTCGCATAGGAAGGTGATGGAGTTGAGGAGGCAGAAAGAGCTGCAAAGGCAGCAACAGCAGCAACTGCTTAGCCAGACTTCAATTTTCGGCGTCTCTCACGGCGGAGATGAGTTCTTGATCCCCCACCACAGTGGTCCAGATTATAGGCATATCATGTAG 1038 0.5684 MLMEVPEYFVGGYFGAAGDQYSQDKRHAGDQKPGEPFAIDDLLDFSNADAMIMSDGFFENAAGNSTDSSTVTVVDSCNSSISGGDNHFSSGHVGSRGFGDPQFSGELCVPYDDLAELEWLSNFVEDSFSAQDHELKTLHLLSGATVCPISTKPQTPESSSSSETLPPFAADTARNALLFHPETPLPGKARSKRSRAAPGDWSTRLLHLITPTAAPEPAQAKAASAKKRESSNSESSGRKCLHCAVEKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLAKHSNSHRKVMELRRQKELQRQQQQQLLSQTSIFGVSHGGDEFLIPHHSGPDYRHIM 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1534 345 ProSitePatterns GATA-type zinc finger domain. 240 265 IPR000679 GO:0006355|GO:0043565
Dere12g1534 345 MobiDBLite consensus disorder prediction 180 237 - -
Dere12g1534 345 Pfam GATA zinc finger 240 273 IPR000679 GO:0006355|GO:0043565
Dere12g1534 345 Coils Coil 298 318 - -
Dere12g1534 345 CDD ZnF_GATA 239 286 IPR000679 GO:0006355|GO:0043565
Dere12g1534 345 PANTHER GATA TRANSCRIPTION FACTOR 31 315 - -
Dere12g1534 345 FunFam GATA transcription factor 229 315 - -
Dere12g1534 345 Gene3D - 229 314 IPR013088 GO:0006355|GO:0008270
Dere12g1534 345 PIRSF Txn_fac_GATA_plant 22 326 IPR016679 GO:0003677|GO:0005634|GO:0045893
Dere12g1534 345 ProSiteProfiles GATA-type zinc finger domain profile. 234 270 IPR000679 GO:0006355|GO:0043565
Dere12g1534 345 SMART GATA_3 234 284 IPR000679 GO:0006355|GO:0043565
Dere12g1534 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1534 Dere-ChrDere12 27875827 27877159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1534 35 345 C2C2-Gata Transcription Factor Family AT4G32890 47.188 1.37e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere12g1534 GATA 1.3e-14 CL0167