Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1529 ATGCCGGTACTGCGTAGTGGAGTGCGCAGGGGCCGAGCAACAGCGAAGCAACAACAAGAAAAGAAGCAGCTTAATCCGATCGAAGAAGGCGAAGCGATTGCAACAAGGACAAGGAGGAGGAGGGCGGCGGCGGCGGCAGCAGCGGCAGGGCCCAAGAATAACAAGCAACAGCATCAGGTGGTGGATGTGATCAATGGCAACGTAGTTGCCCCGGCCAAGGAGGAGGAAGCGAATAAGGGTTTGGACGAAGCTCTTCTTCGTGTTGGTACCGCCGGTGGTGGCGCCAGTGGTGACGTGGTTGCCGATTTGGGAGAGGAGAAGGAAGAGATAGGGGAGAAGCAAATGGATGATCACGATAGTGGAGCTCGGAGCAACGATAAGGCCAATGTTGGTGAAGATGAGGGGAGCACAGCTCCGGTTCCTGAGAGGGTACAAGTTGGTGGTTCCCCTTGGTATAAAATAGAAAAAAAACTGGGAAAGGGTGGATTTGGGCAAGTATATGTTGGTCGCCGTGTTAATGCTGTAAATATGAATGAGAGAACTGGACCCGGAGCTGTGGAGGTTGCATTGAAATTTGAGCATAGAAGTAGTAAAGGATGTAACTATGGACCACCACATGAGTGGCAAGTGTACAACACTCTTGGTGGCAGTCATGGTGTGCCAAGAGTACACTACAAGGGTAGGCAAGGTGACTATTATATCATGGTTATGGATATGCTGGGACCTAGCTTGTGGGATGTCTGGAATAATAACTCTCATACAATGTCCACTGAAATGGTTGCATGTATTGCCATTGAAGCAATATCCATATTGGAGAAGATGCACTCTCGAGGGTATGTGCATGGGGATGTGAAGCCTGAAAATTTTCTGCTTGGTACTCCTGGGACCCCAGATGAGAAAAGATTGTTCCTTGTTGATCTTGGATTAGCTACTAGATGGCGGGATAGTTCAACAGGGTTGCATGTGGACTATGACCAAAGGCCAGATGTTTTTAGGGGCACAGTCCGCTATGCTAGTGTGCATGCACATTTAGGGAGAACTGCCAGCAGGAGGGATGATTTGGAATCTCTTGCTTACACACTGGTTTTTCTACTTCGAGGTCGTCTCCCTTGGCAGGGGTACCAGGGAGAAAACAAAGGGTTTTTTGTTTGCAAGAAGAAGATGGGAACAACTCCAGAGGGTCTATGTTGCTTCTGCCCCCAGCCTTTTAAGCTGTTTGTTGAACATGTAGTGAATTTGAAGTTTGATGAAGATCCTAACTACGCAAAATATATTTCTCTTTTTGATGGAATTGTTGGTCCAAATCCAGACATTAGACCAATTAATACAGAAGGTGCGCAAAAGCTCATTGGTCATAAGCGAGGTCGGTTGGCTATGGAAGGAGATGATGATGAACAACCAAAAAAGAAGTTCCGTATGGGGCTGCCAGCAACACAGTGGATAAGTATATACAATGCTCGTAGACCAATGAAACAAAGATATCATTACAATGTGTCAGATACAAGGCTTTCGCAGCACATTGAGAAAGGAAATGAGGATGGCTTATATATAAGCAGTGTGGCTTCATGCTCAAACCTGTGGGCCATAATCATGGATGCAGGCACTGGTTTCACTGACCAAGTTTATGAACTCTCCCCTTACTTTCTCCATAAGGAATGGATAATGGATCACTGGGAAAAAAATTACTATATCAGTGCAGTTGCTGGAGCTACAAATGGGAGCTCATTAGTAGTCATGTCTAAGGGCACACCATATGTGCAGCAATCTTACAAAGTTAGCGATTCATTTCCTTTTAAGTGGATTAACAAAAAATGGAGGGAAGGCTTCTATGTTACATCAATGGCCACCTCAGGGATCAGATGGGGTGTAGTTATGTCACGTGGTGCCGGATTTTCTGACCAGGTGGTTGAACTAGATTTTCTTTATCCCAGTGAAGGGATTCACAAGCGGTGGGATTCTGGATACCGCATCACAGCAACTGCTGCAACTTGGGACCAAGCTGCTTTTGTCCTCAGTGTGCCAAAGAGGAAGCCTGTAGATGAAACACAGGAAACTCTCAGGACCACTGCTTTTCCTAGTACACACGTCAAGGAAAAATGGGCAAAGAACCTTTATATTGCATCTGTCTGCTATGGACGAACTGTTTCGTGA 2151 0.4626 MPVLRSGVRRGRATAKQQQEKKQLNPIEEGEAIATRTRRRRAAAAAAAAGPKNNKQQHQVVDVINGNVVAPAKEEEANKGLDEALLRVGTAGGGASGDVVADLGEEKEEIGEKQMDDHDSGARSNDKANVGEDEGSTAPVPERVQVGGSPWYKIEKKLGKGGFGQVYVGRRVNAVNMNERTGPGAVEVALKFEHRSSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGTPGTPDEKRLFLVDLGLATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFFVCKKKMGTTPEGLCCFCPQPFKLFVEHVVNLKFDEDPNYAKYISLFDGIVGPNPDIRPINTEGAQKLIGHKRGRLAMEGDDDEQPKKKFRMGLPATQWISIYNARRPMKQRYHYNVSDTRLSQHIEKGNEDGLYISSVASCSNLWAIIMDAGTGFTDQVYELSPYFLHKEWIMDHWEKNYYISAVAGATNGSSLVVMSKGTPYVQQSYKVSDSFPFKWINKKWREGFYVTSMATSGIRWGVVMSRGAGFSDQVVELDFLYPSEGIHKRWDSGYRITATAATWDQAAFVLSVPKRKPVDETQETLRTTAFPSTHVKEKWAKNLYIASVCYGRTVS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1529 716 MobiDBLite consensus disorder prediction 14 38 - -
Dere12g1529 716 CDD STKc_CK1 152 428 - -
Dere12g1529 716 SUPERFAMILY Protein kinase-like (PK-like) 152 432 IPR011009 -
Dere12g1529 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Dere12g1529 716 ProSitePatterns Protein kinases ATP-binding region signature. 158 191 IPR017441 GO:0005524
Dere12g1529 716 SMART serkin_6 152 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1529 716 Pfam Protein kinase domain 152 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1529 716 FunFam casein kinase 1-like protein HD16 125 472 - -
Dere12g1529 716 Gene3D Transferase(Phosphotransferase) domain 1 116 453 - -
Dere12g1529 716 ProSiteProfiles Protein kinase domain profile. 152 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1529 716 PANTHER CASEIN KINASE-RELATED 144 681 - -
Dere12g1529 716 MobiDBLite consensus disorder prediction 108 130 - -
Dere12g1529 716 MobiDBLite consensus disorder prediction 1 60 - -
Dere12g1529 716 MobiDBLite consensus disorder prediction 108 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1529 Dere-ChrDere12 27827877 27833722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1529 128 310 EF-hand Containing Proteins AT2G17890 27.411 3.00e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Dere12g1529 Pkinase 4.4e-17 CL0016