Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1523 ATGACTCGTCGGTGCTCTCACTGTAGCAATAACGGGCACAACTCCCGAACATGCCCGTCCCGAGGTGGTGGCGGCGGCGGGTGCGCTGGGGGTGTGAAGCTGTTTGGTGTTAGACTCACCGATGGATCAATCATCAAAAAGAGCGCAAGCATGGGGAATCTCTCTACTCATTACTATTCTTCTTCATCCGCCGCTGGATCACCGAATCCCAGCTCGCCCAGCTCCGACCCGCTCCGAGACCCGATTCATGAACCCGACGGGTGCTTGTCCGACGACCCTTCTCATGCCTCCAGTTCCGCGAACCGTCGTGGAGAAAGAAAGAAAGGTGTTCCGTGGACTGAAGAAGAACATAGGATGTTCTTGATTGGTCTCCAAAAGCTGGGTAAAGGAGACTGGCGAGGCATAGCTCGCAACTTTGTTGTGTCAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAAAAGTACTTTATCCGGCAGAGTAATGCCACCCGGAGAAAGAGACGATCCAGTCTTTTCGACATGGTTCCCGACATGGCTTCAGAATCTCCTTCAGTGCCAGAAGAACAAGTATTACTGCCACCTTCAGAGAACTCACAACCTGGTAGCGCAAAATTACAACCATCATTAGATCTTTCCCTCAAGTCAGAATTTGAACCTATGGAAACTAATTGTCAAGAAAATGTGGAAGAGGCCAATGAAACTATGGTAAGATCAAGTGGATTAACACCAGTGGCTACTGGGTTCATGCCAACATATGTACCTATCTCATTTTCCATCTGGCCATCAAATGCGGCTCCCTCTGAAGAAGTTAATGGAGCTGAGACATCTCATCATCAAATCCTTAAGCCAATCCCGATCATTCCAAAGGAACCTGTCAATGTTGATCAACTTGTTGGCATGTCTCAGCTAAGTCTTGGGGAAACACAAAAACGTGATAGTGAGCCTTCCCCACTTTCCTTGAAGTTGCTGGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCAGCTTTAAACAATGGCAAGAACAGTGCAATTCAAGCAGTTTAA 1065 0.4864 MTRRCSHCSNNGHNSRTCPSRGGGGGGCAGGVKLFGVRLTDGSIIKKSASMGNLSTHYYSSSSAAGSPNPSSPSSDPLRDPIHEPDGCLSDDPSHASSSANRRGERKKGVPWTEEEHRMFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSNATRRKRRSSLFDMVPDMASESPSVPEEQVLLPPSENSQPGSAKLQPSLDLSLKSEFEPMETNCQENVEEANETMVRSSGLTPVATGFMPTYVPISFSIWPSNAAPSEEVNGAETSHHQILKPIPIIPKEPVNVDQLVGMSQLSLGETQKRDSEPSPLSLKLLGEPSRQSAFHANAPVGGSALNNGKNSAIQAV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1523 354 FunFam transcription factor MYB1R1 110 161 - -
Dere12g1523 354 PANTHER TRANSCRIPTION FACTOR KUA1 3 251 - -
Dere12g1523 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 160 IPR017930 -
Dere12g1523 354 SMART sant 108 158 IPR001005 -
Dere12g1523 354 MobiDBLite consensus disorder prediction 58 111 - -
Dere12g1523 354 Pfam Myb-like DNA-binding domain 111 156 IPR001005 -
Dere12g1523 354 MobiDBLite consensus disorder prediction 331 354 - -
Dere12g1523 354 Gene3D - 112 161 - -
Dere12g1523 354 SUPERFAMILY Homeodomain-like 106 161 IPR009057 -
Dere12g1523 354 MobiDBLite consensus disorder prediction 1 24 - -
Dere12g1523 354 CDD SANT 111 156 IPR001005 -
Dere12g1523 354 ProSiteProfiles SANT domain profile. 112 160 IPR017884 -
Dere12g1523 354 NCBIfam myb-like DNA-binding domain, SHAQKYF class 107 159 IPR006447 GO:0003677
Dere12g1523 354 MobiDBLite consensus disorder prediction 1 18 - -
Dere12g1523 354 MobiDBLite consensus disorder prediction 58 73 - -
Dere12g1523 354 MobiDBLite consensus disorder prediction 177 207 - -
Dere12g1523 354 MobiDBLite consensus disorder prediction 191 207 - -
Dere12g1523 354 ProSiteProfiles Myb-like domain profile. 104 156 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1523 Dere-ChrDere12 27770818 27774465 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g1523 Myb_DNA-binding 2.9e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1523 12 27770818 27774465 Dere12g1523 12 27770818 27774465 ECH