Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1515 ATGAATCTTGTACCAAGACCCCACTCGTATTTGCTTCACTTTCTCCTCTTCTTTCTGCACCTCCACTCCCTCTGTTCCTATACCACACCCTTGAACTGTACGGACACATCCCGCGTCTGCACTTCTTTCTTGGCCTATAAGCCTCAACCACACCAAACCTTAGCCTTAGTTCAGAGCATGTTTGATGTATTGCCTGACGACATTACTGTTGAAGGCAATGGCCGGGGCTACATATTTATAAAAAAGAAGTGTTCTTGTGCTGCTGGTATGAAAAAATACGTATCCGGCACCACTTATACTGTAAAATCCAATGAAGGGTTTGTGTATGACTTGGTGATGAAGGCCTATGATGGGCTTGCTTTCTTGAACAACACGACTAGGAGGGCAGAAAACGGCGCCGTTATATCATTGGAGTTGTTTTGTGGTTGCTCCAGTGGACCGTGGAACTATATGGTGAGTTACGTGATGAGAGAAGGCGATAGTATTGTATCTCTGGCGAGTCGGTTTGGAGTTAGTATGGATAGTATAGAGACGGTAAATGGCATCACCAATCCTGATAATGTCACTGTGGGTTCTCTGTATTATATACCTCTTAATTCGGTTCCTGGTGAGCCATATGCCCTGAAGAATGATACTTCTCCTGCTCCTGCTCCTACTCCTGCCACATCTATTGACAATGTTTCTGCTAATCAAGTCAGTCAGTCTCACGTACCCTACCTATGGATCCTTGGGGCTTTAGGGATTAGTCTTGCGCTCATAATATTAAGCATAATTCTTTACTTCTGTGTGAGATCATCCAATTGTTTTGCTGAAGCAAGAACAAGTCATGCAAAAGATGGTGAGGGCAAGACCTCTCACAGATTTCATATTCTTCAAAATCCAAGTTTTTGCTGCGGTTCAGGAAGGTATATGCAGGGCAAACCTGTAGAACAGAGGCAAGCAGATTGCGAATCCAGCAACCACCAGATTACCATTCCCAAAGTTTCAACTATGGCGATTGATGTCTTTGAAGTGGAGAACCCTGTAGTCTTCACATTTGAAGAGATTTGTTCCTCAACTGAGGGTTTCTCTGATTCAAATCTACTTGGGCATGGTACTTATGGTTCTGTTTATTATGGCTTCCTTCGTGATCAGGAGGTTGCTATTAAAAGAATGACTGCTACAAAAAGTAAGGAATTCTTATCAGAGATGAAGGTCCTGTGCAAGGTTCATCATGCAAATCTGGTAGAATTGATCGGCTTTGCCGCTAGTCATGATGAGCTTTTCCTTATTTATGAATATGCCCAGAAGGGTTCACTTGGAAGCCATTTGCATGATCCTCTGACTAAGGGTTCCTCCTCGCTGTCTTGGATCATGAGGGTTCAGATAGCACTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCACACCAAAACTCATTATGTCCATAGAGATATCAAGACAAGCAACATCTTACTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTATTGGGAAAGCCAATGAGGAAGAAATTAATGCCACCAAAGTCGTTGGCACGTATGGTTATCTTGCGCCAGAATACTTGAGTGATGGCCTTGCTACGACCAAAAGTGATGTCTATGCATTTGGCATTGTTCTTTTTGAGATAATATCAGGGAAGGAGGCCACTATACGAACAGAAGGCAATGTGACAAAAAATCCTGAAAGACGTTCACTTGCATCTATTATGTTGGCAGCTCTTAGAAATTCACCTGATTCAATGAGTATGTCGAGTTTGAGAGATCATATTGATCCTAATATGATGAACCTATATCCCCATGATTGTGTGTTTAAGATGGCCATGCTGGCAAAGCAATGTGTGGATGATGATCCCATCTTAAGACCTGACATGAAACAAGTTGTGATTTCCCTCTCACACATCCTCCTGTCTTCTATTGAGTGGGAAGCAACTCTAGCTGGGAACAGCCAGGTATTCAGTGGGCTTGTTCAGGGAAGATAG 2001 0.4288 MNLVPRPHSYLLHFLLFFLHLHSLCSYTTPLNCTDTSRVCTSFLAYKPQPHQTLALVQSMFDVLPDDITVEGNGRGYIFIKKKCSCAAGMKKYVSGTTYTVKSNEGFVYDLVMKAYDGLAFLNNTTRRAENGAVISLELFCGCSSGPWNYMVSYVMREGDSIVSLASRFGVSMDSIETVNGITNPDNVTVGSLYYIPLNSVPGEPYALKNDTSPAPAPTPATSIDNVSANQVSQSHVPYLWILGALGISLALIILSIILYFCVRSSNCFAEARTSHAKDGEGKTSHRFHILQNPSFCCGSGRYMQGKPVEQRQADCESSNHQITIPKVSTMAIDVFEVENPVVFTFEEICSSTEGFSDSNLLGHGTYGSVYYGFLRDQEVAIKRMTATKSKEFLSEMKVLCKVHHANLVELIGFAASHDELFLIYEYAQKGSLGSHLHDPLTKGSSSLSWIMRVQIALDAARGLEYIHEHTKTHYVHRDIKTSNILLDASFRAKISDFGLAKLIGKANEEEINATKVVGTYGYLAPEYLSDGLATTKSDVYAFGIVLFEIISGKEATIRTEGNVTKNPERRSLASIMLAALRNSPDSMSMSSLRDHIDPNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISLSHILLSSIEWEATLAGNSQVFSGLVQGR 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1515 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Dere12g1515 666 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 19 660 IPR044812 GO:0019199|GO:0045087
Dere12g1515 666 Gene3D Transferase(Phosphotransferase) domain 1 429 652 - -
Dere12g1515 666 ProSitePatterns Protein kinases ATP-binding region signature. 362 383 IPR017441 GO:0005524
Dere12g1515 666 ProSiteProfiles LysM domain profile. 152 196 IPR018392 -
Dere12g1515 666 Gene3D Phosphorylase Kinase; domain 1 328 427 - -
Dere12g1515 666 Gene3D LysM domain 147 203 IPR036779 -
Dere12g1515 666 FunFam Kinase family protein 331 427 - -
Dere12g1515 666 SUPERFAMILY Protein kinase-like (PK-like) 334 638 IPR011009 -
Dere12g1515 666 Pfam LysM domain 154 191 IPR018392 -
Dere12g1515 666 Pfam Protein tyrosine and serine/threonine kinase 360 636 IPR001245 GO:0004672|GO:0006468
Dere12g1515 666 SMART LysM_2 153 197 IPR018392 -
Dere12g1515 666 ProSiteProfiles Protein kinase domain profile. 356 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1515 666 SUPERFAMILY LysM domain 152 197 IPR036779 -
Dere12g1515 666 SMART serkin_6 356 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1515 666 CDD STKc_IRAK 362 635 - -
Dere12g1515 666 FunFam PTI1-like tyrosine-protein kinase 3 428 652 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1515 Dere-ChrDere12 27686041 27690996 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1515 30 666 Receptor kinase-like Gene Family AT1G51940 65.839 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Dere12g1515 PK_Tyr_Ser-Thr 1.5e-50 CL0016