Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1514 ATGAATGGAAGGTCAAGAAACGAGGAGGTATCTCCTCAGCTGCTAGATTTAATCCCAAAAGGCACAGAGTGGCATGTAAACAGAGACGAAGGAAGGAGCCACCACAAGTCTTCTTCAGAAGAGAGGAAACTTGAGCTTAGACTTGGTCCGCCAGGTGAAGAAGACTATGTCGTCAGAGGAAGAGACGACTCTCTGCTCTCTCTTGGTTACTTCCCAACCACCATCAATGGAAGCCAAACCCAGAAAATTTTGTCCTCTCCTTGGGCTTCCCCCGGCTACCAGGAGAAGAAGACTCAGAACAATAATCAACACAAGGGGGTTTCATCATTTCTTCAGCCACAGCCCTCTTCTGCAAATACAGCTGTACCCAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTAGTGGGTTGGCCTCCGATTCGTTCATTTAGGAAGAACCTTGCAAGCAGTAGCTCTTCTAAGGTTGTTCCTCAACATGAGTCTCAGAAGCAGCATGTGGTTCCAGATAAGGTTGCTGGGAAGAAACCTGTTGTCGACAACGTTGTGGTTGGTAAGGGCCTGTTCGTAAAGATCAATATGGATGGAGTTCCCATAGGGAGAAAAGTGGACCTCAGTGCCTACGATAGCTATGAAAAACTCTCCTCTGCTGTTGACGAACTCTTTAGAGGCCTCCTTGCTGCTCAAAAAGATTCCTGTGGTGGTGGAATTCAGAACAAGCAAGAGGAAGAGAAAGCCATCACGGGTTTATTGGATGGAAGTGGAGAATACACTCTTGTTTATGAGGATAATGAAGGGGACAGGATGCTTGTTGGAGATGTGCCATGGCACATGTTCGTATCAACCGTGAAGAGACTGCGTGTACTGAAGAGTTCTGAGCTTTCTGCATTTACCCGTGAAAATAGAGGGAAGGAAAACTTGTTAACAGATGTGTGTACTTGTTATGATGATGCTCTGTTTAGTAGTGACCATTGA 975 0.4626 MNGRSRNEEVSPQLLDLIPKGTEWHVNRDEGRSHHKSSSEERKLELRLGPPGEEDYVVRGRDDSLLSLGYFPTTINGSQTQKILSSPWASPGYQEKKTQNNNQHKGVSSFLQPQPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLASSSSSKVVPQHESQKQHVVPDKVAGKKPVVDNVVVGKGLFVKINMDGVPIGRKVDLSAYDSYEKLSSAVDELFRGLLAAQKDSCGGGIQNKQEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTRENRGKENLLTDVCTCYDDALFSSDH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1514 324 MobiDBLite consensus disorder prediction 86 131 - -
Dere12g1514 324 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 41 294 IPR003311 GO:0005634|GO:0006355
Dere12g1514 324 MobiDBLite consensus disorder prediction 1 54 - -
Dere12g1514 324 ProSiteProfiles PB1 domain profile. 187 291 IPR000270 GO:0005515
Dere12g1514 324 MobiDBLite consensus disorder prediction 86 139 - -
Dere12g1514 324 SUPERFAMILY CAD & PB1 domains 183 288 - -
Dere12g1514 324 MobiDBLite consensus disorder prediction 149 168 - -
Dere12g1514 324 FunFam Auxin-responsive protein 183 302 - -
Dere12g1514 324 Pfam AUX/IAA family 44 296 IPR033389 -
Dere12g1514 324 MobiDBLite consensus disorder prediction 22 54 - -
Dere12g1514 324 Gene3D - 183 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1514 Dere-ChrDere12 27666214 27669250 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1514 190 302 B3 DNA Binding Superfamily AT4G23980 32.743 6.49e-13 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Dere12g1514 AUX_IAA 4.2e-70 CL0072