Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1512 ATGGATGGCTTTCGTTATAGTAATATTTGTTTGACCATTCTAGTAAATCTCGCCGAATTTGGAAGGCCCAAAGAATCGTTTCAGATTTGCCTGCTCTCATTACTTCTCTGCTTGCAACCTGTAAAGATTCTGCTTGATCTCTCAGACCTCTTTCTTGCACTAAACTCCACCTCTTTGTCCCCTTCATCTTTCAAACATTTATCGCGCTTCGAAGTTTTAGAGAGAGAAGGAGAGATTATGGGGAAGGCTACCAGGTGGTTGAAGGGCTTGTTGGGGATGAAGAAAGAGAAGGACCACATCCCCAATTCAGGCTCATTGGCTCCTGACAAGAAGGAAAAGAAACGCTGGAGTTTCGCTAAGTCGGGCAAGGATTCGGATTCCGAAACGGGTCAACCCGGTTTTCCTCCTCGTGATTCCGCATGGCTCAGATCTTATATTTCTGAAACAGAGAAAGAGCAAAACAAGCACGCAATTGCGGTGGCCGCTGCCACCGCCGCCGCCGCCGATGCTGCAGTTGCAGCCGCCCAGGCAGCCGTCGCCGTCGTGAGGCTTACTAGCCACGGCAGAGGGACTCTGTTTAGTGGGAGTAGAGAAAAATGGGCTGCCGTGAAGATTCAAACCGTTTTCAGAGGCTATTTGGCCAGGAAGGCCCTTAGAGCGTTGAAAGGATTGGTTAAGATTCAAGCTCTCGTTAGAGGCTATCTAGTTCGAAAGAGAGCTGCTGCAACTCTTCATAGCATGCAGGCTCTGATCAGAGCTCAGGCTGCCGTTCGATCACAGCGAGCTCGTCGTTCCATTAGCAAAGAAAATCAACTTCAATCCGAATTCCGAGCTAGAAAATCTATGGACCGAGTTGATGAAACGAGAAGTGATATCCACAGTAAAAGGCTATCTGCATCATATGAACATTCCTTCAATGGGTTTGATGAGAGTCCGAAGATTGTCGAGATAGACACATACAGGACGCAATCCAGATCCAGGAGAATTGCTACGACGCTTTCAGAATGTGGAGAGGAGATTCCATACCAAATGATGTCGTTTCCCGATAACGGACACCTTCAAGATTTTGAGTGGTGCTTCCACGGCGATGAATGCAGATTCTCCACGGCTCAGAGCACTCCTCGTCTTGCAAACTGTGCGCGTGCTCACAACGCTCCTGCCACGCCAGCCAAGAGCGTCTATGGCGACTCCTTTTTCCGCGCTTACTCTAATTTCCCGAATTACATGGCCAATACGCAGTCGTTTAAGGCGAAACTAAGGTCTCACAGTGCACCGAAGCAAAGGCCAGAATCAAAGAAGCGGCTTTCGCTGAATGAAATAATGGCCGCGAGAAACAGCATAAGCAGCGTTAGAATGCAGAGGTCGTCCTGTTCTCAAGTTCAAGACGAATCATGCAATTTTTCTCTAGATCCAATGGAAATTGCTGTTTGGTTTTCTGTTGAATTTTCCGTCGCAGAGTTTCTACGCACATTGCTCTGCATGGAGCAGGGATGTGAGTAG 1500 0.4807 MDGFRYSNICLTILVNLAEFGRPKESFQICLLSLLLCLQPVKILLDLSDLFLALNSTSLSPSSFKHLSRFEVLEREGEIMGKATRWLKGLLGMKKEKDHIPNSGSLAPDKKEKKRWSFAKSGKDSDSETGQPGFPPRDSAWLRSYISETEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSHGRGTLFSGSREKWAAVKIQTVFRGYLARKALRALKGLVKIQALVRGYLVRKRAAATLHSMQALIRAQAAVRSQRARRSISKENQLQSEFRARKSMDRVDETRSDIHSKRLSASYEHSFNGFDESPKIVEIDTYRTQSRSRRIATTLSECGEEIPYQMMSFPDNGHLQDFEWCFHGDECRFSTAQSTPRLANCARAHNAPATPAKSVYGDSFFRAYSNFPNYMANTQSFKAKLRSHSAPKQRPESKKRLSLNEIMAARNSISSVRMQRSSCSQVQDESCNFSLDPMEIAVWFSVEFSVAEFLRTLLCMEQGCE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1512 499 PANTHER IQ-DOMAIN 5-RELATED 80 438 - -
Dere12g1512 499 MobiDBLite consensus disorder prediction 98 122 - -
Dere12g1512 499 MobiDBLite consensus disorder prediction 98 138 - -
Dere12g1512 499 Gene3D - 140 224 - -
Dere12g1512 499 SMART iq_5 220 241 IPR000048 GO:0005515
Dere12g1512 499 SMART iq_5 197 219 IPR000048 GO:0005515
Dere12g1512 499 ProSiteProfiles IQ motif profile. 246 275 IPR000048 GO:0005515
Dere12g1512 499 Pfam IQ calmodulin-binding motif 225 239 IPR000048 GO:0005515
Dere12g1512 499 Pfam IQ calmodulin-binding motif 200 219 IPR000048 GO:0005515
Dere12g1512 499 ProSiteProfiles IQ motif profile. 198 226 IPR000048 GO:0005515
Dere12g1512 499 Pfam Protein of unknown function (DUF4005) 374 456 IPR025064 -
Dere12g1512 499 MobiDBLite consensus disorder prediction 262 289 - -
Dere12g1512 499 ProSiteProfiles IQ motif profile. 222 249 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1512 Dere-ChrDere12 27652446 27655661 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1512 80 452 IQD Protein Family AT3G16490 58.182 6.30e-117 348
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1512 12 27652446 27655661 Dere12g1512 12 27652446 27655661 ECH