Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1508 ATGCGTGAGGGTTACCTGGCTTTGTCTCGTCCATCGCTGCAGCTCAGATTTTTTCTTGCTTCAACTCATGTCTTCTCGATTATCTGCTCCACTCCTTTGGTTCCTGACAAGAGTAGCACACGGAAGGCCAACAAAGAGAGGAATGCCGAGAAAGATCCCAACAAATCGAAAAGACCACCTAGTGCTTTTCTCGTCTTCCTCGAGGAGTTCAGAAAGACCTTCAAGGCAGAAAATCCTAACGTGAGGGCTGTATCAGTTGTTGGGAAAGCTGGAGAAGAGAAATGGAAATCCCTGACTAGTGCTGAAAAAGCACCATATGAAGCCAAAGCTGCGTTTGTTCAGCTGCTATGA 351 0.4672 MREGYLALSRPSLQLRFFLASTHVFSIICSTPLVPDKSSTRKANKERNAEKDPNKSKRPPSAFLVFLEEFRKTFKAENPNVRAVSVVGKAGEEKWKSLTSAEKAPYEAKAAFVQLL 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1508 116 CDD HMG-box_AtHMGB1-like 57 111 - -
Dere12g1508 116 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 56 116 IPR009071 -
Dere12g1508 116 MobiDBLite consensus disorder prediction 39 57 - -
Dere12g1508 116 Pfam HMG (high mobility group) box 57 111 IPR009071 -
Dere12g1508 116 Gene3D High mobility group box domain 39 114 IPR036910 -
Dere12g1508 116 MobiDBLite consensus disorder prediction 33 60 - -
Dere12g1508 116 SMART hmgende2 55 114 IPR009071 -
Dere12g1508 116 SUPERFAMILY HMG-box 44 111 IPR036910 -
Dere12g1508 116 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 37 111 IPR031061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1508 Dere-ChrDere12 27568474 27569423 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Dere12g1508 HMG_box 1.2e-16 CL0114