Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1473 ATGCCTATCTTGTGGAGCACTCAGCAACAAAACATTGTTGAGGAAGCCGGCTACTCCATGCCCAACGATTCAACTGTAGTTCTGAGTCAAATGCAAGAGACGCAGAATACGCCAGCTCAAATAGATCATGATCATCATCTATACCCAGTTTGCGACTTCGTGCTAGATTATTTCAACATCAACATGGCCCACCAGCAGCAACAACAGCAACAGCAACAACAACTCATCAATGGTGGCGTCTCACAGAATGACGTCACACAAGATGATGGGAATATATCCCTGATTCTATCTGATCGCTGTAGGAGAAACATATGGAGCTTCGGTCATAGTGCAGTTTCCTCTGGTGAATCTCAGAGTAACGCCTCTGCTTCTGCAGCTTCCCATGGTACTAGAAAGAACGAGGACATGCAGGGTCACGTCAATGAAATTGATGATACAGTGTCTCAGAGCACTTCCTCACACCCAAATGTCGAATCTGTTAGAAAATGCAAAGACATGCAGTGTCACGTCAATCAACTTGATGATACCTTGTCTCAGAGCAGTTCTTCTCATCATCAAGGCAAAACTGTTGAAGCCAAGGCTAATCATGCAAAAAGAAGTTTTACACTTATCTCAGAGAATAACAATCCTCCGAAACCCAAGAAACCAAGATGGGATAACAACCGTCCATGCTCGTCGAACATAAATTTTCAGCAGCCAAACTCATGTATATCATCATATAATTCCATTAATGAAGAGCCTGATCCAGAGGCCATAGCACAAATGAAGGAGATGATATATAGGGCTGCAGCTTTTAGGCCTGTGAACTTAGGGTTGGAGGTAGGGGAAAAGCCTAAGAGGAAGAATGTGAGAATATCAACGGATCCACAAACTGTGGCAGCGAGGCAAAGGAGAGAGCGAATAAGCGAGAGGATTAGGGTTTTGCAGAAGCTAGTGCCTGGTGGAAGCAAGATGGACACAGCCTCAATGCTTGATGAGGCAGCTAATTACCTCAAGTTTCTCAGATCACAGGTCAAAGCATTGGAGGGTCTGGGGAAAAAGATTGACTCTATGAACTGTGCTCCCTTCTCTTTCAATAACCCAAGTCATAGCTTCCAGCAATATTATTCCCCCAGTTAA 1119 0.4424 MPILWSTQQQNIVEEAGYSMPNDSTVVLSQMQETQNTPAQIDHDHHLYPVCDFVLDYFNINMAHQQQQQQQQQQLINGGVSQNDVTQDDGNISLILSDRCRRNIWSFGHSAVSSGESQSNASASAASHGTRKNEDMQGHVNEIDDTVSQSTSSHPNVESVRKCKDMQCHVNQLDDTLSQSSSSHHQGKTVEAKANHAKRSFTLISENNNPPKPKKPRWDNNRPCSSNINFQQPNSCISSYNSINEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVGEKPKRKNVRISTDPQTVAARQRRERISERIRVLQKLVPGGSKMDTASMLDEAANYLKFLRSQVKALEGLGKKIDSMNCAPFSFNNPSHSFQQYYSPS 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1473 372 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 84 362 IPR045843 GO:0003700|GO:0006355
Dere12g1473 372 Gene3D - 290 353 IPR036638 GO:0046983
Dere12g1473 372 MobiDBLite consensus disorder prediction 111 131 - -
Dere12g1473 372 Pfam Helix-loop-helix DNA-binding domain 295 334 IPR011598 GO:0046983
Dere12g1473 372 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 285 334 IPR011598 GO:0046983
Dere12g1473 372 MobiDBLite consensus disorder prediction 111 134 - -
Dere12g1473 372 SMART finulus 291 340 IPR011598 GO:0046983
Dere12g1473 372 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 343 IPR036638 GO:0046983
Dere12g1473 372 MobiDBLite consensus disorder prediction 176 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1473 Dere-ChrDere12 26950394 26951512 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1473 81 369 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 50.519 6.38e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere12g1473 HLH 7.6e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1473 12 26950394 26951512 Dere11g1562 11 28502266 28504449 CCT
Dere12g1473 12 26950394 26951512 Dere12g1473 12 26950394 26951512 ECH