Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1465 ATGAAAAGGGACAGGAAGAAGATGGCCACAGTATCAGGGCAGCTCATATGGGAGATCGTGAAGAGGAACAACTGTTTTTTGGTGAAAGAGTTTGGCAGGGGGACTCAGAGCGTCCAGTTCAGCAAAGAGAGCAACAATCTCTACAACCTCAACTCTTTCAAGCACTCTGGTTTGGCAAACAAGAAGACCGTTACTATTCAACCTGCGGGCAAAGATCAGTCTGTGTTGCTGGCTACGACCAAGACAAAAAAACAGAACAAGCCTGCTGCCTTGCTTCATAAATCTGTCTTGAAAAAGGAGTTCCCAAGAATGGCAAAGGCCGTGGTAAACCAGGTGGCAAATAACTACTACAGGCCTGATCTTAAGAAGGCAGCCCTTGCAAGGTTGAGTGCTGTTCATAGGAGTCTGAAAGTTGCAAAGTCTGGCGTTAAGAAGAGGAACAGACAGGCTGTGAAGGTCCCTGGTAGAAAGTGA 474 0.4684 MKRDRKKMATVSGQLIWEIVKRNNCFLVKEFGRGTQSVQFSKESNNLYNLNSFKHSGLANKKTVTIQPAGKDQSVLLATTKTKKQNKPAALLHKSVLKKEFPRMAKAVVNQVANNYYRPDLKKAALARLSAVHRSLKVAKSGVKKRNRQAVKVPGRK 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1465 157 Gene3D - 12 140 - -
Dere12g1465 157 Pfam Ribosomal L28e protein family 15 135 IPR029004 -
Dere12g1465 157 PANTHER 60S RIBOSOMAL PROTEIN L28 8 157 IPR002672 GO:0003735|GO:0005840|GO:0006412
Dere12g1465 157 FunFam 60S ribosomal protein L28 12 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1465 Dere-ChrDere12 26883360 26886980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1465 8 150 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 77.622 1.35e-79 230
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1465 12 26883360 26886980 Dere11g1555 11 28419322 28422787 CCT
Dere11g1555 11 28419322 28422787 Dere12g1465 12 26883360 26886980 ECH
Dere12g1465 12 26883360 26886980 Dere12g1465 12 26883360 26886980 ECH