Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1450 ATGTCAAATATTTCTATCTTGCAGGCTTCATCAGATTTGAGTGTATTAGACTTTGATATACCTTATCCCATCACCTTTGTACTAGCTGGTGGAGGTGAACTTCTAGCAACGATTGGGATAATGGCGTCAGTCACATGGCAAGTACTTATTGTTGCTGTTCCCGCCATAGTAGCATCCAAATACATTCAGGGCTATTATCAAGCCTCTTCTAGGGAACTGATGAGGATCAATGGAACAACAAAAGCTCCAGTTATGAATTTCACAGCTGAGACATCACTTGGAGTGGTGACTGTGAGAGCTTTCAACATGGTAGACAGATTTTACCATCATTACCAAAAGCTTGTGGATACAGATGCAAAACTATTCTTTCATTCTAATGCAGCCACAGAATGGTTAATTTTGAGGATTGAAGCACTTCAGAATTTGACACTCTTCGCAGCGGCTTTACTGCTTGTTCTACTTCCAAAGAGATTTGTGCTCCCTGGCCTTGCAGGACTTTCTCTATCATATGCTTTGTCACTAACAGGAACCCAAATTTTCTTGAGTCGATGGTTTTGCAACTTATCAAATTATATTGTCTCCGTTGAAAGAATTCATCAGTTCATTCACATACCAGAAGAGCCTCCTGGAATTGTGGAGGACAGAAAACCTCCATCTTCATGGCCTTCGAAGGGTAGGATTGATCTTCAAAATCTTGAGATTAGGTATCGACCAAATGCTCCATTAGTCCTTAAAGGAATCACTTGTACGTTTATAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGGACTGGCAGCGGAAAAACTACACTTATAAGTGCTCTGTTTCGCTTAGTTGAGCCTGCAAGAGGTGATATTCTTATAGATGGGATTAGTATATGCTCAATGGGGTTGAAGGATTTGAGGATGAAGCTGAGCATTATTCCTCAAGAACCAACTCTTTTCAGGGGTAGCATTAGAACCAACTTGGACCCTCTAGGCCTCTACTCTGATGATGAAATGTGGAAGGCTTTAGAGAGATGCCAGCTCAAAACAACAATTAGCAATCTACCAAACCTATTGGACTCTCCAGTGAGTGATGAAGGTGAAAATTGGAGTGTGGGACAGCGCCAACTCTTTTGTCTTGGAAGAGTACTTCTCAAGCGAAACAGAATTCTTGTTCTTGATGAAGCTACTGCTTCAATTGATTCTGCCACAGATGCCATTCTGCAACAAGTTATTAGACAAGAATTTGCAGGATCTACTGTTATAACTGTAGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTCTCTTACGGGAAACTGGTGGAATATGATGAGCCTTCGAAGCTTATGGAGACAAACTCTTCTTTCTCTAAACTAGTAGCTGAGTATTGGTCCAGCTGCAGCAAGAATCTCTCCCAAAACATTAAATAA 1428 0.4132 MSNISILQASSDLSVLDFDIPYPITFVLAGGGELLATIGIMASVTWQVLIVAVPAIVASKYIQGYYQASSRELMRINGTTKAPVMNFTAETSLGVVTVRAFNMVDRFYHHYQKLVDTDAKLFFHSNAATEWLILRIEALQNLTLFAAALLLVLLPKRFVLPGLAGLSLSYALSLTGTQIFLSRWFCNLSNYIVSVERIHQFIHIPEEPPGIVEDRKPPSSWPSKGRIDLQNLEIRYRPNAPLVLKGITCTFIEGSRVGVVGRTGSGKTTLISALFRLVEPARGDILIDGISICSMGLKDLRMKLSIIPQEPTLFRGSIRTNLDPLGLYSDDEMWKALERCQLKTTISNLPNLLDSPVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQVIRQEFAGSTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMETNSSFSKLVAEYWSSCSKNLSQNIK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1450 475 Gene3D ABC transporter type 1, transmembrane domain 6 208 IPR036640 GO:0005524|GO:0016020
Dere12g1450 475 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 229 461 IPR003439 GO:0005524
Dere12g1450 475 Pfam ABC transporter transmembrane region 10 172 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1450 475 Gene3D - 211 461 IPR027417 -
Dere12g1450 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 460 IPR027417 -
Dere12g1450 475 SMART AAA_5 253 445 IPR003593 GO:0016887
Dere12g1450 475 Pfam ABC transporter 244 392 IPR003439 GO:0005524
Dere12g1450 475 CDD ABCC_MRP_domain2 225 445 - -
Dere12g1450 475 SUPERFAMILY ABC transporter transmembrane region 10 209 IPR036640 GO:0005524|GO:0016020
Dere12g1450 475 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 10 190 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1450 475 FunFam ABC transporter C family member 3 210 461 - -
Dere12g1450 475 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 6 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1450 Dere-ChrDere12 26693979 26696992 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1450 225 459 Calmodulin-binding Proteins AT2G36910 31.950 5.51e-33 131