Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1449 ATGGAAATGGGGACCAGCTTGCAATCAATGCTTCTGTTGGCTTCAATGATAGTATTGTTTCCATCACGAAGGGATTTCTCATGGATTTGTCTTAGAGATTTTGATTTGACTTCCTTCTGCACTCAGAGGAGCATAATAGACATTGTCAATGCACTCTTTCTCTGTGCTTTCTACATATCTTTTCTCAGCAGTTTGATCAGAAAAAACTATACAAGTGAGAGCCACAGAAGGGGGTGGGTTTCTTCAGCTGTCTCAGTTTGTTGTGCTCTTGTAAGCTTTGCATATTTCAGTAATGCTTTGTGGAATCTTATAGCCAAATCCGAAGCCTTGAAGCAGCTGGGGTGGTTAGTTCATCTATTCAGAGGACTAGTTTGGATTTCTCTGACAGTTTCTTTGCTTGTTCAGAGATCTACGTGTATAAAAATTCTAAACTCTGTTTGGTGGGCATCTTCATGCGTACTTGCCTCAGCTCTCAATATTGAGATTCTGTTCAGTGTGCATAATATTCAAATACTTGATATTTTTCAGTGGCCTGTTCATTTTTTACTTGCTTTCTGTGCCTTCCAAAGCTTTCATTTTGCACCTCAAAGCACTCAAAATACCACTATATCAGAGCCTCTTTTAACTCAAAAGGTTGATAAGAAACAAACAGAACTTGCACATGCCAATTTTTTCAGCAGTTTGACTTTCTCTTGGATTAATTCCTTACTGAGTTTAGGCTATTCGAAGCCACTAGCTCTTGATGATATCCCTTCTCTTGTTTCTGAAGATGAAGCTTATTTAGCTTATCAGAAGTTTTCTCATGCATGGGATTCCTTCTTGAGGGATCGGAGCAAGAACAATAATACCAAAAACCTAGTTATTCGGTCTATATCAAAAGTTTACTTGAAAGAGAACATTCTCATAGCAATCTGGGCATTGCTAAGGACAATTGCTGTTGTAGCTTCTCCTTTGTTGCTCTATGCTTTTGTGAACTATTCAAATAGTAAAGAGGAAAATCTAAAAGAGGGTCTTGCTATCTTGGGTTGCTTGGTTATCACCATGGTCTTTGAATCTTTGCCTCAAAGACACTGGTTTTATCACTCAAGAAGGTCAGGAATGCGATTGAGATCAGCTCTAATGGTGGCAATCTATAACAAGTTGTTGAAGCTTTCAAGTACAGCTAGAAGAAGACACTCAACTGGGGAAATAGTGAATTACATAGCAGTTGATGCCTATAGAATGGGAGAATTTCCATGGTGGTTTCACACCATATGGGCTTCTGCATTACAACTTTTTCTAGCCATTGGGGTTCTATTTGGTGTTGTGGGTCTTGGTGCTCTTCCTGGTTTGGTCCCTTTTCTCTTATGTGGCCTTCTTAATATCCCCTTTGCAAAGATCCTTCAAAAGTGTCAATCAGAATTTATGGTTGCACAGGATGAACGTCTAAGATCAACTTCGGAGATCCTAAATAATATGAAAATCATAAAGCTGCAATCTTGGGAGGAAAAGTTCAAGACTTTGGTTGAAACCCTTCGAGCCAAAGAGTTCACATGGTTGGCTAAGGCACAATTTACGAAAGCTTATGGGACGTTTATCTATTGGATGTCTCCTACCATTGTTTCCTCTGTAATTTTCCTAGGATGTGCTCTTTTCCAAAGTGCCCCTTTGAATGCTGGAACCATATTCACTGTTCTTGCAACTTTAAGGAGCATGGGAGAACCAGCTAGAATGATCCCAGAGGCTCTTTCTGTTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTTAACACCTTTTTGCTTGACGATGAGCTACATGATGATGGCACTGGAACAAACTCAATGCAAAGTTCAGTTAATAGTGTGGAAATTCAAGGTGGTAACTTCAGTTGGGGTCAGGAATCCATGCCTCCAACTTTGCGAGATTTGAACGTAGAAATCAAATGGGGGCAGACAATTGCAATTTGTGGGCCAGTTGGAGCTGGAAAGTCATCCCTCATATACGCAATTCTTGGCGAGATACCCAAAATTTCAGGAACTGTTAACGTGGGTGGAACACTAGCCTACGTTTCTCAAACATCTTGGATCCAAAGTGGGACAATTCGCGATAATATACTCTTCGGCAAACCAATGAACAGAACCAGATATGACAATGCCCTTAAAGTTTGTGCCTTGGATAAGGATATCAACGCTTTCTGCCATGGTGATCTTACAGAAATAGGTCAGCGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTGGCTCGGGCAGTATATAATGATGCTGATATTTATCTATTAGACGACCCTTTCAGTGCAGTGGATGCGCATACTGCTGCAATTCTATTCAATGATTGTGTCATGACCGCTCTGAGGAAGAAAACTGTCATTCTAGTGGCTCATCAAGTGGAGTTTCTCTCACAAGTTGATAAAATCATGGTAATGGAAGGAGGAAAAGTTACTCAATTAGGAAGTTATGAAGATCTTCTGACAAAAGGGACTGCCTTTGAACAACTTGTTAAAGCCCATAGAGAAGCAATATCAGGGTCAGATCAGAGCAATGAAATCCAAGGAGTATCTGACGATGTAGTTAGAGTTCTTCAGCCATTGGAGTCTCATGGCTTTCATCTCTCCAAGAATCACAAGAGTGATGGGGAAATTTCTACAAACGGTCAACCTGGAGTACAACTTACACAAGAAGAAGAAAAGGAGATTGGTGATGTTGGATGGAAACCATTCTGGAATTATCTTCTTCTCTCCAACGGATCATTGCTTCTGTGTTTAAGCATTTTAGCACAGTTGACTTTTATTGCTTTGCTAGCAGCATCAACTTATTGGCTTGCTCTAGCCATAGAAGTACCAAAAATAACTAATGGCATCTTGATTGGGGTTTACACAATAGTTTCACTTCTGAGTGCCGTCTTTGTATGCCTAAGGAGTATCATGGGTGCACATCTTGGATTAAAAGCTTCTTCATCCTTCTTCTCTAATATGAATAATGCTATCTTCAAGGCTCCTATGCTTTTCTTTGACTCAACCCCTGTGGGAAGGATTTTGACTCGAGTGAGATAA 3060 0.4026 MEMGTSLQSMLLLASMIVLFPSRRDFSWICLRDFDLTSFCTQRSIIDIVNALFLCAFYISFLSSLIRKNYTSESHRRGWVSSAVSVCCALVSFAYFSNALWNLIAKSEALKQLGWLVHLFRGLVWISLTVSLLVQRSTCIKILNSVWWASSCVLASALNIEILFSVHNIQILDIFQWPVHFLLAFCAFQSFHFAPQSTQNTTISEPLLTQKVDKKQTELAHANFFSSLTFSWINSLLSLGYSKPLALDDIPSLVSEDEAYLAYQKFSHAWDSFLRDRSKNNNTKNLVIRSISKVYLKENILIAIWALLRTIAVVASPLLLYAFVNYSNSKEENLKEGLAILGCLVITMVFESLPQRHWFYHSRRSGMRLRSALMVAIYNKLLKLSSTARRRHSTGEIVNYIAVDAYRMGEFPWWFHTIWASALQLFLAIGVLFGVVGLGALPGLVPFLLCGLLNIPFAKILQKCQSEFMVAQDERLRSTSEILNNMKIIKLQSWEEKFKTLVETLRAKEFTWLAKAQFTKAYGTFIYWMSPTIVSSVIFLGCALFQSAPLNAGTIFTVLATLRSMGEPARMIPEALSVMIQVKVSFDRLNTFLLDDELHDDGTGTNSMQSSVNSVEIQGGNFSWGQESMPPTLRDLNVEIKWGQTIAICGPVGAGKSSLIYAILGEIPKISGTVNVGGTLAYVSQTSWIQSGTIRDNILFGKPMNRTRYDNALKVCALDKDINAFCHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRKKTVILVAHQVEFLSQVDKIMVMEGGKVTQLGSYEDLLTKGTAFEQLVKAHREAISGSDQSNEIQGVSDDVVRVLQPLESHGFHLSKNHKSDGEISTNGQPGVQLTQEEEKEIGDVGWKPFWNYLLLSNGSLLLCLSILAQLTFIALLAASTYWLALAIEVPKITNGILIGVYTIVSLLSAVFVCLRSIMGAHLGLKASSSFFSNMNNAIFKAPMLFFDSTPVGRILTRVR 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1449 1019 Pfam ABC transporter transmembrane region 301 561 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1449 1019 Pfam ABC transporter transmembrane region 931 1018 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1449 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 837 IPR027417 -
Dere12g1449 1019 FunFam Multidrug resistance protein associated1 594 858 - -
Dere12g1449 1019 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 300 581 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1449 1019 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 617 838 IPR003439 GO:0005524
Dere12g1449 1019 CDD ABCC_MRP_domain1 615 815 - -
Dere12g1449 1019 SUPERFAMILY ABC transporter transmembrane region 289 595 IPR036640 GO:0005524|GO:0016020
Dere12g1449 1019 CDD ABC_6TM_ABCC_D1 301 589 IPR044746 GO:0140359
Dere12g1449 1019 Pfam ABC transporter 633 767 IPR003439 GO:0005524
Dere12g1449 1019 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 220 1018 - -
Dere12g1449 1019 Gene3D - 591 860 IPR027417 -
Dere12g1449 1019 ProSitePatterns ABC transporters family signature. 740 754 IPR017871 GO:0005524|GO:0016887
Dere12g1449 1019 Gene3D ABC transporter type 1, transmembrane domain 290 590 IPR036640 GO:0005524|GO:0016020
Dere12g1449 1019 SMART AAA_5 642 823 IPR003593 GO:0016887
Dere12g1449 1019 FunFam ABC transporter C family member 10 283 597 - -
Dere12g1449 1019 Gene3D ABC transporter type 1, transmembrane domain 864 1019 IPR036640 GO:0005524|GO:0016020
Dere12g1449 1019 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 924 1019 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1449 1019 SUPERFAMILY ABC transporter transmembrane region 919 1018 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1449 Dere-ChrDere12 26685633 26693887 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1449 593 826 Calmodulin-binding Proteins AT2G36910 32.271 1.45e-24 109