Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1447 ATGTTACGTGAGCAAGATCACCATTATTGGAGGCAACAAACACTGATAGCTGGATTGGATATATGTAGAGTGGGGGCAAAATTGTCTATTTCCATCCTTTTCCATTCAGATAGTATTGTTTCCATCACGAAAGATTTTGATTTGACTTCCTTCTGCACTCAGAGGAGCATAATAGACATTGTCAATGCACTCTTTCTCTGTGCTTTCTACATATCTTTTCTCAGCAGTTTGATCAGAAAAAACTATACAAGTGAGAGCCACAGAAGGGGGTGGGTTTCTTCAGCTGTCTCAGTTTGTTGTGCTCTTGTAAGCTTTGCATATTTCAGTAATGCTTTGTGGAATCTTATAGCCAAATCCGAAGCCTTGAAGCAGCTGGGGTGGTTAGTTCATCTATTCAGAGGACTAGTTTGGATTTCTCTGACAGTTTCTTTGCTTGTTCAGAGATCTACGTGTATAAAAATTCTAAACTCTGTTTGGTGGGCATCTTCATGCGTACTTGCCTCAGCTCTCAATATTGAGATTCTGTTCAGTGTGCATAATATTCAAATACTTGATATTTTTCAGTGGCCTGTTCATTTTTTACTTGCTTTCTGTGCCTTCCAAAGCTTTCATTTTGCACCTCAAAGCACTCAAAATACCACTATATCAGAGCCTCTTTTAACTCAAAAGGTTGATAAGAAACAAACAGAACTTGCACATGCCAATTTTTTCAGCAGTTTGACTTTCTCTTGGATTAATTCCTTACTGAGTTTAGGCTATTCGAAGCCACTAGCTCTTGATGATATCCCTTCTCTTGTTTCTGAAGATGAAGCTTATTTAGCTTATCAGAAGTTTTCTCATGCATGGGATTCCTTCTTGAGGGATCGGAGCAAGAACAATAATACCAAAAACCTAGTTATTCGGTCTATATCAAAAGTTTACTTGAAAGAGAACATTCTCATAGCAATCTGGGCATTGCTAAGGACAATTGCTGTTGTAGCTTCTCCTTTGTTGCTCTATGCTTTTGTGAACTATTCAAATAGTAAAGAGGAAAATCTAAAAGAGGGTCTTGCTATCTTGGGTTGCTTGGTTATCACCATGGTCTTTGAATCTTTGCCTCAAAGACACTGGTTTTATCACTCAAGAAGGTCAGGAATGCGATTGAGATCAGCTCTAATGGTGGCAATCTATAACAAGTTGTTGAAGCTTTCAAGTACAGCTAGAAGAAGACACTCAACTGGGGAAATAGTGAATTACATAGCAGTTGATGCCTATAGAATGGGAGAATTTCCATGGTGGTTTCACACCATATGGGCTTCTGCATTACAACTTTTTCTAGCCATTGGGGTTCTATTTGGTGTTGTGGGTCTTGGTGCTCTTCCTGGTTTGGTCCCTTTTCTCTTATGTGGCCTTCTTAATATCCCCTTTGCAAAGATCCTTCAAAAGTGTCAATCAGAATTTATGGTTGCACAGGATGAACGTCTAAGATCAACTTCGGAGATCCTAAATAATATGAAAATCATAAAGCTGCAATCTTGGGAGGAAAAGTTCAAGACTTTGGTTGAAACCCTTCGAGCCAAAGAGTTCACATGGTTGGCTAAGGCACAATTTACGAAAGCTTATGGGACGTTTATCTATTGGATGTCTCCTACCATTGTTTCCTCTGTAATTTTCCTAGGATGTGCTCTTTTCCAAAGTGCCCCTTTGAATGCTGGAACCATATTCACTGTTCTTGCAACTTTAAGGAGCATGGGAGAACCAGCTAGAATGATCCCAGAGGCTCTTTCTGTTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTTAACACCTTTTTGCTTGACGATGAGCTACATGATGATGGCACTGGAACAAACTCAATGCAAAGTTCAGTTAATAGTGTGGAAATTCAAGGTGGTAACTTCAGTTGGGGTCAGGAATCCATGCCTCCAACTTTGCGAGATTTGAACGTAGAAATCAAATGGGGGCAGACAATTGCAATTTGTGGGCCAGTTGGAGCTGGAAAGTCATCCCTCATATACGCAATTCTTGGCGAGATACCCAAAATTTCAGGAACTGTTAACGTGGGTGGAACACTAGCCTACGTTTCTCAAACATCTTGGATCCAAAGTGGGACAATTCGCGATAATATACTCTTCGGCAAACCAATGAACAGAACCAGATATGACAATGCCCTTAAAGTTTGTGCCTTGGATAAGGATATCAACGCTTTCTGCCATGGTGATCTTACAGAAATAGACGACCCTTTCAGTGCAGTGGATGCGCATACTGCTGCAATTCTATTCAATGATTGTGTCATGACCGCTCTGAGGAAGAAAACTGTCATTCTAGTGGCTCATCAAGTGGAGTTTCTCTCACAAGTTGATAAAATCATGGTAATGGAAGGAGGAAAAGTTACTCAATTAGGAAGTTATGAAGATCTTCTGACAAAAGGGACTGCCTTTGAACAACTTGTTAAAGCCCATAGAGAAGCAATATCAGGGTCAGATCAGAGCAATGAAATCCAAGGAGTATCTGACGATGTAGTTAGAGTTCTTCAGCCATTGGAGTCTCATGGCTTTCATGTCTCCAAGAATCACAAGAGTGATGGGGAAATTTCTACAAACGGTCAACCTGGAGTACAACTTACACAAGAAGAAGAAAAGGAGATTGGTGATGTTGGATGGAAACCATTCTGGAATTATCTTCTTCTCTCCAACGGATCATTGCTTCTGTGTTTAAGCATTTTAGCACAGTTGACTTTTATTGCTTTGCTAGCAGCATCAACTTATTGGCTTGCTCTAGCCATAGAAGTACCAAAAATAACTAATGGCATCTTGATTGGGGTTTACACAATAGTTTCACTTCTGAGTGCCGTCTTTGTATGCCTAAGGAGTATCATGGGTGCACATCTTGGATTAAAAGCTTCTTCATCCTTCTTCTCTAATATGAATAATGCTATCTTCAAGGCTCCTATGCTTTTCTTTGACTCAACCCCTGTGGGAAGGATTTTGACTCGAGTGAGATAA 3006 0.4012 MLREQDHHYWRQQTLIAGLDICRVGAKLSISILFHSDSIVSITKDFDLTSFCTQRSIIDIVNALFLCAFYISFLSSLIRKNYTSESHRRGWVSSAVSVCCALVSFAYFSNALWNLIAKSEALKQLGWLVHLFRGLVWISLTVSLLVQRSTCIKILNSVWWASSCVLASALNIEILFSVHNIQILDIFQWPVHFLLAFCAFQSFHFAPQSTQNTTISEPLLTQKVDKKQTELAHANFFSSLTFSWINSLLSLGYSKPLALDDIPSLVSEDEAYLAYQKFSHAWDSFLRDRSKNNNTKNLVIRSISKVYLKENILIAIWALLRTIAVVASPLLLYAFVNYSNSKEENLKEGLAILGCLVITMVFESLPQRHWFYHSRRSGMRLRSALMVAIYNKLLKLSSTARRRHSTGEIVNYIAVDAYRMGEFPWWFHTIWASALQLFLAIGVLFGVVGLGALPGLVPFLLCGLLNIPFAKILQKCQSEFMVAQDERLRSTSEILNNMKIIKLQSWEEKFKTLVETLRAKEFTWLAKAQFTKAYGTFIYWMSPTIVSSVIFLGCALFQSAPLNAGTIFTVLATLRSMGEPARMIPEALSVMIQVKVSFDRLNTFLLDDELHDDGTGTNSMQSSVNSVEIQGGNFSWGQESMPPTLRDLNVEIKWGQTIAICGPVGAGKSSLIYAILGEIPKISGTVNVGGTLAYVSQTSWIQSGTIRDNILFGKPMNRTRYDNALKVCALDKDINAFCHGDLTEIDDPFSAVDAHTAAILFNDCVMTALRKKTVILVAHQVEFLSQVDKIMVMEGGKVTQLGSYEDLLTKGTAFEQLVKAHREAISGSDQSNEIQGVSDDVVRVLQPLESHGFHVSKNHKSDGEISTNGQPGVQLTQEEEKEIGDVGWKPFWNYLLLSNGSLLLCLSILAQLTFIALLAASTYWLALAIEVPKITNGILIGVYTIVSLLSAVFVCLRSIMGAHLGLKASSSFFSNMNNAIFKAPMLFFDSTPVGRILTRVR 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1447 1001 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 232 745 - -
Dere12g1447 1001 FunFam ABC transporter C family member 10 295 609 - -
Dere12g1447 1001 Gene3D ABC transporter type 1, transmembrane domain 853 1001 IPR036640 GO:0005524|GO:0016020
Dere12g1447 1001 SUPERFAMILY ABC transporter transmembrane region 301 607 IPR036640 GO:0005524|GO:0016020
Dere12g1447 1001 Gene3D - 745 841 IPR027417 -
Dere12g1447 1001 Gene3D - 610 744 IPR027417 -
Dere12g1447 1001 SUPERFAMILY ABC transporter transmembrane region 901 1000 IPR036640 GO:0005524|GO:0016020
Dere12g1447 1001 Pfam ABC transporter 645 703 IPR003439 GO:0005524
Dere12g1447 1001 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 629 820 IPR003439 GO:0005524
Dere12g1447 1001 CDD ABC_6TM_ABCC_D1 313 601 IPR044746 GO:0140359
Dere12g1447 1001 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 906 1001 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1447 1001 Pfam ABC transporter transmembrane region 913 1000 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1447 1001 Pfam ABC transporter transmembrane region 313 573 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1447 1001 CDD ABCC_MRP_domain1 627 797 - -
Dere12g1447 1001 Gene3D ABC transporter type 1, transmembrane domain 286 609 IPR036640 GO:0005524|GO:0016020
Dere12g1447 1001 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 312 593 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Dere12g1447 1001 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 819 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1447 Dere-ChrDere12 26673073 26677803 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1447 627 989 Calmodulin-binding Proteins AT2G36910 20.930 1.60e-10 63.5