Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere12g1446 | ATGTCGAGTGGGGGCAAAATTGTCTATTTCCATCCTTTTCCATCACGAAGGGATTTCTCATGGATTTGTCTCAGAGATTTTGATTTGACTTCCTTCTGCACTCAGAGGAGCATAATAGACATTGTCAATGCACTCTTTCTCTGTGCTTTCTACATATCTTTTCTCAGCAGTTTGATCAGAAAAAACTATACAAGTGAGAGCCACAGAAGGGGGTGGGTTTCTTCAGCTGTCTCAGTTTGTTGTGCTCTTGTAAGCTTTGCATATTTCAGTAATGCTTTGTGGAATCTTAGAGCCAAATCCGAAGCCTTGAAGCAGCTGGGGTGGTTAGTTCATCTTTTCAGAGGACTAGTTTGGATTTCTCTGACAGTTTCTTTGCTTGTTCAGAGATCTACGTGTATAAAAATTCTAAACTCTGTTTGGTGGGCATCTTCATGCGTACTTGCCTCAGCTCTCAATATTGAGATTCTGTTCAGTGTTCATAATATTCAAATACTTGATATTTTTCAGTGGCCTGTTCATTTTTTACTTGCTTTCTGTGCCTTCCAAAGCTTTCATTTTGCACCTCAAAGCACTCAAAATACCACTATATCAGAGCCTCTTTTAACTCAAAAGGTTGATAAGAAACAAACAGAACTTGCACATGCCAATTTTTTCAGCAGTTTGACTTTCTCTTGGATTAATTCCTTACTGAGTTTAGGCTATTCAAAGCCACTAGCTCTTGATGATATCCCTTCTCTTGTTTCTGAAGATGAAACTTATTTAGCCTACCAGAAGTTTTCTCATGCATGGGATTCCTTCTTGAGGGATCGGAGAAAGAACAATAATACCAAAAACTTAGTTATTTGGTCTATATCAAAAGTTTACTTGAAAGAGAACATTCTCATAGCAATCTGCGCATTGCTAAGGACAATTGCTGTTGTAGTTTCTCCTTTGTTGCTCTATGCTTTTGTGAACTATTCAAATAGTAAAGAGGAAAATCTAAAAGAGGGTCTTGCAATATTGGGTTGCTTGGTTATCACCAAGGTCATTGAATCTTTGCCTCAAAGACACTGGTTTTATCACTCAAGAAGGTCAGGAATGCGAATGAGATCAGCTCTAATGGTGGCAATCTATAACAAGTTGTTGAAGCTTTCAAGTACAGCTAGAAGAAGACACTCCACTGGGGAAATAGTGAATTACATAGCAGTTGATGCCTATAGAATGGGAGAATTTCCATGGTGGTTTCACACCATATGCGCTTCTGCATTACAACTTTTTCTAGCCATTGGGGTTCTGTTTGGTGTTGTGGGTCTTGGTGCTCTTCCTGGTTTGGTCCCTTTTCTCTTATGTGGCCTTCTTAATATCCCCTTTGCAAAGATCCTTCAAAAGTGTCAATCAGAATTTATGGTTGCACAGGATGAACGTCTGAGATCAACTTCAGAGATCCTAAATAATATGAAAATCATAAAGCTGCAATCTTGGGAGGAAAAGTTCAAGACTTTGGTTGAAACCCTTCGAGCCAAAGAGTTCACATGGCTGGCTAAGGCACAATTTTCGAAAGCGTATGGGACGTTTATCTATTGGATGTCTCCTACCATTGTTTCCTCTGTAATTTTCCTAGGATGTGCTCTTTTCCATAGTGCCCCTTTGAATGCTGGAACCATATTCACTGTTCTTGCAACTTTAAGGAGCATGGGAGAACCAGCTAAAATGATCCCAGAGGCTCTTTCTGTTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTTAACACCTTTTTGCTTGACGATGAGCTACATAATGATGGCATTGGAACAAACTCAATGCAAAGTTCAGTTAATAGTGTGGAAATTCAAGGTGGTAACTTCAGTTGGGGTCAGGAATCCATGCCTCCAACTTTGCGAGATTTGAACGTAGAAATCAAATGGGGGCAGACAACTGCAATTTGTGGGCCAGTTGGAGCTGGAAAGTCATCCCTCATATACGCAATTCTTGGCGAGATGCCCAAAATTTCAGGAACTGTTAACGTGGGTGGAACACTAGCCTACGTTTCTCAAACATCTTGGATCCAAAGTGGGACAATTCGCGATAATATACTCTTTGGCAAACCAATGGACAAAACCAGATATGACAATGCCCTTAAAGTTTGTGCCTTGGATAAGGATATCAGCGTTTTTAGCCACGGTGATCTTACAGAAATAGGTCAGCGAGGGATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTGGCTCGGGCAGTATATAATGATGCTGATATTTATCTATTAGATGACCCTTTCAGTGCAGTAGATGCGCATACTGCTGCAATTCTATTCAATGATTGTGTCATGACTGCTCTGAGGAAGAAAACTGTCATTCTAGTGACTCATCAAGTGGAGTTTCTCCCACAAGTTGATAAAATCATGGTAATGGAAGGAGGAAAAGTTACTCAATTAGGAAGTTATGAAGATCTTCTGACAAAAGGGACTGCCTTTGAACAACTTGTTAAAGCCCATAGAGAAGCAATATCAGGGTCAGATCAGAGCAATGAAATCCAAGGAGAATCTGACGATGTAGTTAGAGTTCTTCAGCCATTGGAGTCTCATGGCTTTCATCTCTCCAAGAATCAAAAGAGTGAGGGGGAAATTTCTACAAAAGGTCAACCTAGAGTACAACTTACACAAGAAGAAGAAAAGGAGATTGGTGATGTTGGATGGAAACCATTCTGGAATTATCTTTTTCTCTCCAACGGATCATTGCTACTGTGTTTGAGCATTTTAGCACAGTTGACTTTTATTGCTTTGCAAGCAGCATCAACTTATTGGCTTGCTCTAGCCATAGAAGTACCAAAAATAACTAATGGCATCTTGATTGGGGTTTACACAATAGTTTCACTTCTGAGTGCCGTCTTTGTATGCCTAAGGAGTATCATGGGTGCACATCTTGGATTAAAAGCTTCTTCATCCTTCTTCTCTAATATGAATAATGCTATCTTCAAGGCTCCTATGCTTTTCTTTGACTCAACCCCTGTGGGAAGGATTTTGACTCGAGCTTCATCAGATTTGAGTGTATTAGACTTTGATATACCTTATGCCATCACCTTTGTACTAGGTGGTGGAACTGAACTTCTAGCAACGATTGGGATAATGGCGTCAGTCACATGGCAAGTACTTATTGTTGCTGTTCCCGCCATAGTAGCATCCAAATACATTCAGGGCTATTATCAAGCCTCTTCTAGGGAACTGATGAGGATCAATGGAACAACAAAAGCTCCAGTTATGAATTTCACAGCTGAGACGTCACTTGGAGTGGTGACTGTGAGAGCTTTCAACATGGTAGACAGATTTCACCATAATTACCAAAAGCTTGTGGATACAGATGCAAAACTATTCTTTCATTCTAATGCAGCCACAGAATGGTTAATTTTGAGGATTGAAGCACTTCAGAATTTGACACTCTTCGCAGCGGCTTTACTGCTTGTTCTACTTCCAAAGGGATTTGTGCTCCCTGGCCTTGCAGGTCTTTCTCTATCATATGCTTTGTCACTAACAGGAACCCAAATTTTCTTGAGTCGATGGTTTTGCAACTTATCAAATTATATTGTCTCCGTTGAAAGAATTAGTCAGTTCATTCACATACCAGAAGAGCCTCCTGCAATTGTGGAGGACAGAAAACCTCCATCTTCATGGCCTTCGAAGGGTAGGATTGATCTTCAAAATCTCGAGATCAGGTATCGACCAAATGCTCCATTAGTCCTTAAAGGAATCACTTGTACGTTTATAGAAGGGAGTAGAGTGGGAGTTGTAGGAAGGACTGGCAGCGGAAAAACTACACTTATAAGTGCTCTGTTTCGCTTAGTTGAGCCTGCAAGAGGTGATATTCTTATAGATGGGATTAGTATATGCTCAATAGGGTTGAAGGATTTGAGGATGAAGCTGAGCATTATTCCTCAAGAACCAACTCTTTTCAGGGGTAGCATTAGAACCAACTTGGACCCTCTAGGCCTCTACTCTGATGATGAAATGTGGAAGGCTTTAGAGAGATGCCAGCTCAAAACAACAATTAGCAATCTACCAAACCTATTGGACTCTCCAGTGAGTGATGAAGGTGAAAATTGGAGTGTGGGACAGCGCCAACTCTTTTGTCTTGGAAGAGTACTTCTCAAGCGAAACAGAATTCTTGTTCTTGATGAAGCTACTGCTTCAATTGATTCTGCCACAGATGCCATTCTGCAACAAGTTATTAGACAAGAATTTGCAGGATCTACTGTTATAACTGTAGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTCTCTTACGGGAAACTGGTGGAATATGATGAGCCTTCGAAGCTTATGGAGACAAACTCTTCTTTCTCTAAACTAGTAGCTGAGTATTGGTCCAGCTGCAGCAAGAATCTCTCCCAAAACATTAAATAA | 4434 | 0.4057 | MSSGGKIVYFHPFPSRRDFSWICLRDFDLTSFCTQRSIIDIVNALFLCAFYISFLSSLIRKNYTSESHRRGWVSSAVSVCCALVSFAYFSNALWNLRAKSEALKQLGWLVHLFRGLVWISLTVSLLVQRSTCIKILNSVWWASSCVLASALNIEILFSVHNIQILDIFQWPVHFLLAFCAFQSFHFAPQSTQNTTISEPLLTQKVDKKQTELAHANFFSSLTFSWINSLLSLGYSKPLALDDIPSLVSEDETYLAYQKFSHAWDSFLRDRRKNNNTKNLVIWSISKVYLKENILIAICALLRTIAVVVSPLLLYAFVNYSNSKEENLKEGLAILGCLVITKVIESLPQRHWFYHSRRSGMRMRSALMVAIYNKLLKLSSTARRRHSTGEIVNYIAVDAYRMGEFPWWFHTICASALQLFLAIGVLFGVVGLGALPGLVPFLLCGLLNIPFAKILQKCQSEFMVAQDERLRSTSEILNNMKIIKLQSWEEKFKTLVETLRAKEFTWLAKAQFSKAYGTFIYWMSPTIVSSVIFLGCALFHSAPLNAGTIFTVLATLRSMGEPAKMIPEALSVMIQVKVSFDRLNTFLLDDELHNDGIGTNSMQSSVNSVEIQGGNFSWGQESMPPTLRDLNVEIKWGQTTAICGPVGAGKSSLIYAILGEMPKISGTVNVGGTLAYVSQTSWIQSGTIRDNILFGKPMDKTRYDNALKVCALDKDISVFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRKKTVILVTHQVEFLPQVDKIMVMEGGKVTQLGSYEDLLTKGTAFEQLVKAHREAISGSDQSNEIQGESDDVVRVLQPLESHGFHLSKNQKSEGEISTKGQPRVQLTQEEEKEIGDVGWKPFWNYLFLSNGSLLLCLSILAQLTFIALQAASTYWLALAIEVPKITNGILIGVYTIVSLLSAVFVCLRSIMGAHLGLKASSSFFSNMNNAIFKAPMLFFDSTPVGRILTRASSDLSVLDFDIPYAITFVLGGGTELLATIGIMASVTWQVLIVAVPAIVASKYIQGYYQASSRELMRINGTTKAPVMNFTAETSLGVVTVRAFNMVDRFHHNYQKLVDTDAKLFFHSNAATEWLILRIEALQNLTLFAAALLLVLLPKGFVLPGLAGLSLSYALSLTGTQIFLSRWFCNLSNYIVSVERISQFIHIPEEPPAIVEDRKPPSSWPSKGRIDLQNLEIRYRPNAPLVLKGITCTFIEGSRVGVVGRTGSGKTTLISALFRLVEPARGDILIDGISICSIGLKDLRMKLSIIPQEPTLFRGSIRTNLDPLGLYSDDEMWKALERCQLKTTISNLPNLLDSPVSDEGENWSVGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQVIRQEFAGSTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMETNSSFSKLVAEYWSSCSKNLSQNIK | 1477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere12g1446 | 1477 | FunFam | ABC transporter C family member 10 | 276 | 590 | - | - | |
| Dere12g1446 | 1477 | CDD | ABC_6TM_ABCC_D1 | 294 | 582 | IPR044746 | GO:0140359 | |
| Dere12g1446 | 1477 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1219 | 1462 | IPR027417 | - | |
| Dere12g1446 | 1477 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1231 | 1463 | IPR003439 | GO:0005524 | |
| Dere12g1446 | 1477 | FunFam | ABC transporter C family member 5 | 878 | 1210 | - | - | |
| Dere12g1446 | 1477 | Pfam | ABC transporter | 1246 | 1394 | IPR003439 | GO:0005524 | |
| Dere12g1446 | 1477 | SMART | AAA_5 | 1255 | 1447 | IPR003593 | GO:0016887 | |
| Dere12g1446 | 1477 | SMART | AAA_5 | 635 | 816 | IPR003593 | GO:0016887 | |
| Dere12g1446 | 1477 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 605 | 830 | IPR027417 | - | |
| Dere12g1446 | 1477 | CDD | ABCC_MRP_domain1 | 608 | 808 | - | - | |
| Dere12g1446 | 1477 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 610 | 831 | IPR003439 | GO:0005524 | |
| Dere12g1446 | 1477 | Pfam | ABC transporter transmembrane region | 293 | 554 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Dere12g1446 | 1477 | Pfam | ABC transporter transmembrane region | 916 | 1178 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Dere12g1446 | 1477 | FunFam | ABC transporter C family member 3 | 1212 | 1463 | - | - | |
| Dere12g1446 | 1477 | SUPERFAMILY | ABC transporter transmembrane region | 281 | 586 | IPR036640 | GO:0005524|GO:0016020 | |
| Dere12g1446 | 1477 | CDD | ABC_6TM_ABCC_D2 | 911 | 1204 | IPR044726 | GO:0140359 | |
| Dere12g1446 | 1477 | ProSitePatterns | ABC transporters family signature. | 733 | 747 | IPR017871 | GO:0005524|GO:0016887 | |
| Dere12g1446 | 1477 | Gene3D | - | 1212 | 1463 | IPR027417 | - | |
| Dere12g1446 | 1477 | Gene3D | ABC transporter type 1, transmembrane domain | 877 | 1210 | IPR036640 | GO:0005524|GO:0016020 | |
| Dere12g1446 | 1477 | Gene3D | ABC transporter type 1, transmembrane domain | 268 | 588 | IPR036640 | GO:0005524|GO:0016020 | |
| Dere12g1446 | 1477 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 917 | 1192 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Dere12g1446 | 1477 | CDD | ABCC_MRP_domain2 | 1227 | 1447 | - | - | |
| Dere12g1446 | 1477 | SUPERFAMILY | ABC transporter transmembrane region | 902 | 1211 | IPR036640 | GO:0005524|GO:0016020 | |
| Dere12g1446 | 1477 | Pfam | ABC transporter | 626 | 760 | IPR003439 | GO:0005524 | |
| Dere12g1446 | 1477 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 213 | 1465 | - | - | |
| Dere12g1446 | 1477 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 293 | 574 | IPR011527 | GO:0005524|GO:0016020|GO:0055085|GO:0140359 | |
| Dere12g1446 | 1477 | Gene3D | - | 589 | 854 | IPR027417 | - | |
| Dere12g1446 | 1477 | FunFam | Multidrug resistance protein associated1 | 587 | 851 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere12g1446 | Dere-ChrDere12 | 26657134 | 26664878 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere12g1446 | 1022 | 1461 | Calmodulin-binding Proteins | AT2G36910 | 25.330 | 2.11e-31 | 132 |