Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1445 ATGCCGATGAATCGAGAACAACAGAAGCGAGGGAAGCAAGAAAAGGGCTCGGATGCTGCTGAGAAGGTTATTGTTGCCGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTAGTTTGGTCTTTGACTCATGTTGTTCAGCCCGGGGATTGCATTACACTGCTAGTAGTTGTTCCTTCACAAAGTTCTGGTAGAAGATTATGGGGTTTTCCGAGATTTGCCGGTGACTGTGCCAGTGGCCACAAGAAGTCTCTTTCCGGAACAAGTTCTGAGCAGAAGTGTGATATTATTACTGATTCTTGCTCTCAGATGATCCTTCAGCTTCATGACGTCTATGACCCAAATAAGATAAATGTCAAGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCTGCAGAGGCCAAGAAAGCCCATGCCAATTGGGTCGTATTAGACAAACAGCTCAAAAATGAAGAAAAAGGGTGCATGGAAGAGCTGCAATGCAACATTGTGGTTATGAAGCGTTCCCAGGCAAAAGTACTCCGCTTGAATTTGGTTGGATCGCAAAAGAAGGATCCTGAAGAAGCAGGTCAAGTACCTTCTAGGAAAGATGAGATGCATGGAAAACAAACCAAATTGAAGAATGGCTCTTTAAATTCCATAAAAGGACCAGTTGTCACTCCAACTAGCAGCCCAGAGCTGGGGACACCGTTTACTGCAACTGAAGCGGGTACTTCATCAGTTTCAAGCTCTGATCTAGGAACCTCACCATTTTTCATCTCAGAGATGAATGGTGAGTTGAAGAAAGAGGAAACAATCAAGGAAAATCAAGAACCTGATGATACTAATTCAGACACAGACAGTGAAAATCTGTCCACATCTTCAGCAAGCTTGAGATTCCAGCCATGGGTCACGGAGTTACTTCTACATCAACAATCATCTCAGCGCACAGAAGAAAGACCAGAGAGAGCTTATGATAAGCCTCAAACATCTACAACCAGGGCTTTGCTAGAAAAGTTCTCAAAGCTTGATAGAGAAGCTGGAATTGATACCTCAACCAGATGGACAACTGAGTTAGATTTCAGTGGAAATGTAAGAGAAGCAATAGCATTATCCAGAAATGCCCCTCCTGGTCCCCCTCCATTATGTTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAGCCTCCCAAGTGGTTCAGTTATGCCGAGTTGGAGCTTGCTACTGGCGGATTTTCGCAAGCCAATTTCTTAGCAGAAGGAGGATTTGGATCTGTTCATAGAGGGATTCTACCAGATGGACAAGTCATTGCCGTCAAGCAACATAAATTGGCTAGTTCTCAGGGAGATCTTGAATTTTGCTCTGAGGTAGAAGTCCTGAGCTGTGCTCAGCATCGAAATGTTGTTATGCTGATTGGGTTTTGTATAGAAGATAAGAGAAGGCTACTGGTTTATGAGTATATATGCAATGGATCACTAGATTCACATTTATATGGGCGAAAACGAGAACCATTAGAATGGTCTGCAAGGCAAAAAGTTGCTGTTGGAGCTGCCCGAGGGTTGCGATATCTCCATGAAGAGTGCCGAGTGGGTTGCATTATCCACCGTGACATGCGGCCAAACAACATCCTCATCACCCATGATTTTGAACCACTGGTTGGTGATTTTGGACTAGCAAGGTGGCAGCCTGATGGAGACACAGGTGTTGAAACTAGGGTGATTGGAACATTTGGGTACTTGGCTCCAGAATATGCACAAAGTGGCCAAATCACCGAAAAGGCTGATGTTTACTCCTTCGGGGTGGTATTAGTGGAACTTGTTACTGGGCGAAAAGCTGTTGATCTCAATCGACCCAAGGGGCAGCAGTGTCTTACCGAGTGGGCACGCCCACTGTTGGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGCTGGAAAATCGCTATTCAGAACATGAGGTCAATTGCATGTTGCATGCTGCATCATTATGCATACGCCGAGATCCTCATTCTAGACCGCGTATGTCACAGGTTCTCCGAATACTTGAGGGTGACATGGTCATGGAAGCAAATTACATCTCAACTTCTGGTTATGATGTTGGAAACCGGAGTGGTCGAATATGGGCAGGGCAGCAGCAGAGGCAGCACCACTACAGTGGTCCCCTGTTAGAAGAGTCACTGGAAGGGTTCAGTGGGAAGCTCTCCCTAGAGAAATACAGGCCCTCATCCCATTGGGAAAGGGACAAGGTTAGGAGGACTACATGTGAAGATATGTAA 2262 0.4514 MPMNREQQKRGKQEKGSDAAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGHKKSLSGTSSEQKCDIITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKAHANWVVLDKQLKNEEKGCMEELQCNIVVMKRSQAKVLRLNLVGSQKKDPEEAGQVPSRKDEMHGKQTKLKNGSLNSIKGPVVTPTSSPELGTPFTATEAGTSSVSSSDLGTSPFFISEMNGELKKEETIKENQEPDDTNSDTDSENLSTSSASLRFQPWVTELLLHQQSSQRTEERPERAYDKPQTSTTRALLEKFSKLDREAGIDTSTRWTTELDFSGNVREAIALSRNAPPGPPPLCSICQHKAPVFGKPPKWFSYAELELATGGFSQANFLAEGGFGSVHRGILPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRKREPLEWSARQKVAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLENRYSEHEVNCMLHAASLCIRRDPHSRPRMSQVLRILEGDMVMEANYISTSGYDVGNRSGRIWAGQQQRQHHYSGPLLEESLEGFSGKLSLEKYRPSSHWERDKVRRTTCEDM 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1445 753 MobiDBLite consensus disorder prediction 267 291 - -
Dere12g1445 753 MobiDBLite consensus disorder prediction 184 253 - -
Dere12g1445 753 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Dere12g1445 753 MobiDBLite consensus disorder prediction 207 253 - -
Dere12g1445 753 MobiDBLite consensus disorder prediction 306 327 - -
Dere12g1445 753 Pfam Protein tyrosine and serine/threonine kinase 411 676 IPR001245 GO:0004672|GO:0006468
Dere12g1445 753 ProSitePatterns Tyrosine protein kinases specific active-site signature. 528 540 IPR008266 GO:0004672|GO:0006468
Dere12g1445 753 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 483 686 - -
Dere12g1445 753 Gene3D Transferase(Phosphotransferase) domain 1 483 690 - -
Dere12g1445 753 CDD STKc_IRAK 413 679 - -
Dere12g1445 753 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 379 482 - -
Dere12g1445 753 FunFam Dual-specific kinase DSK1-like 14 169 - -
Dere12g1445 753 PANTHER OS01G0750732 PROTEIN 298 685 - -
Dere12g1445 753 MobiDBLite consensus disorder prediction 190 206 - -
Dere12g1445 753 MobiDBLite consensus disorder prediction 308 322 - -
Dere12g1445 753 Gene3D Phosphorylase Kinase; domain 1 379 482 - -
Dere12g1445 753 ProSiteProfiles Protein kinase domain profile. 407 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1445 Dere-ChrDere12 26629174 26633157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1445 387 696 Trihelix Transcription Factor Family AT1G70460 52.188 6.20e-102 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Dere12g1445 PK_Tyr_Ser-Thr 1.7e-41 CL0016