Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1432 ATGCTCCAGTGTTTTCCAGCTGATGATCGCTTGGTTTTGGATTTGTTCGTGGACATTGATGTTGGTGTTAGTCAATATCATGAAGATCCTAATATGATCACCAATCAAATTGTGAAACAATCATTGATGGAACAAGTATCAATGGTTCCAACAATGGAAGAAGCTATTGAGTCTCTGGAGAAACTGAAATTGGCGAAGAACGAAGCTGAAGCAAAACAGTGCAGTATTTGCTTGGAAAATTATGAAGAAGATGATGATGCTTCATCAATGCCGTGTGGCCATATCTATCACAAGAATTGCATTACAAAGTGGCTGAAAATAGGTCATCTGTGCCCATTATGGCGCTTTCAAATTCCAGTAGATTGA 366 0.388 MLQCFPADDRLVLDLFVDIDVGVSQYHEDPNMITNQIVKQSLMEQVSMVPTMEEAIESLEKLKLAKNEAEAKQCSICLENYEEDDDASSMPCGHIYHKNCITKWLKIGHLCPLWRFQIPVD 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1432 121 Pfam Ring finger domain 73 113 IPR001841 -
Dere12g1432 121 SMART ring_2 74 114 IPR001841 -
Dere12g1432 121 ProSiteProfiles Zinc finger RING-type profile. 74 115 IPR001841 -
Dere12g1432 121 PANTHER SI:CH211-59O9.10 53 118 - -
Dere12g1432 121 SUPERFAMILY RING/U-box 73 117 - -
Dere12g1432 121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 120 IPR013083 -
Dere12g1432 121 Coils Coil 52 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1432 Dere-ChrDere12 26379267 26379941 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1432 36 119 C3H Transcription Factor Family AT1G18760 31.395 4.16e-14 64.3