LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere12g1427	ATGGGGTTGCAGCTGATTTTTCTGCTTTTTAAGCTACATTTAGTTTTCAGTGCTCCACAACTTCATGAATATGCAGCCACTAATCTGCATCATTCCAGACGTCATTCAAGTATTGCACTCCCACCGTCAGAGTCACCTTCTAGAGTTCCTGCAAGTATTGCACTTCCACCTTCAAGGTCTTCATCTCAAGTTCGTTCGAAGAGATGGACTCATGGTTTTGTAGATTCTCCAATATTACATCATAATTATCACCATTCCAGAAGCAAGTCCGGCAACCCAACACCTACTCACAACCATAGAGGTCCTTCGGTTCTTCAATCACCGCCTCCTTTCCCTTCACCAATGACCTGGGATTTGCCTGCACCTGCACCTGCTCCTGCACCATCACCAACAGTTCTACCAGGCCACTTGACTGCGCTTTCTCCTTCGTCCAGAGGTCTACCTTTACAGTCATCATCAAATAAGATGAAGAATCCATCGCCATCACCTGTCTTGGCTTTGCCACCTCCACCTCCTAATAGGGTGACTTGCTCAGAGCCCTTTACATATACACCTCCTGGATCACCATGTGGTTGTGTATGGCCACTTCAGGTTAAGCTCCGCATCAGCATTGCAATATACAAGTTTTTTCCTCTGGTTTCAGAGCTAGCTGAAAAAATTGCAGCTAGTGTTTTGCTAAATCGTAGCCAAGTTCGCATTGTGGGAGCTGATGCAGTTAATCACCAACTAGAGAAAACCACTGTTCTCATTAGTTTAGTACCCAAAGAAGTAAATTTTGATGATGCTACAGCATTTTTAATATATAAGAAATTCTGGCACAGGGAGATTCTCACAGATGCTTCCCTCTTTGGAGCCTATGAAGTGCTCTATGTTCATTATCCAGGTCTTCCACCATCTCCCCCTTCAACTCCCTCGAGCATTTATAGCGTGGATGATGGACCATGCCCTGGTTATGACAATAATGGTACAATAATGAAACCTTTAGGAGTAGATTTACCAATGAATAAAAGACAAGGGATTGGTGGAAGCGGAAGCATGATTATTATAATTGTTTTGTCATGTGTGACTGTTTCTGTTCTATTCATTGGGGTTGCCTGGCTTTATCTGTTGAAATGTAGCTCTTGTGCTCAAGAACCTGAACATATCCTGGATTCTTCAATCCCATCATCTTCAAAACCATCAGGGGCTGTTAGGTCATTGACTTATGGGAGCATGCCAGGTTCTGGATCAATGTCATTCAGCTCTGGAATGATAATATATACAGGAACAGCTAGGACTTTCACTTTGGATGATATAGAGAAGGCAACAAACAACTTTGATGCTTCCAGAATAGTAGGAGAAGGAGGCTTCGGGCTTGTCTACAAAGGTGTTCTAAATGATGGAAGGGATGTGGCTGTGAAGATTCTAAAAAGATATGATCATCATGGTGGCCGCGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTACATCATAGAAATCTAGTTAAATTGATAGGTATATGCATGGAGAATCAGACTCGATGCTTGATCTATGAGCTTATCCCTAATGGAAGTGTGGAATCCCACTTACACGGTGCTGACAAGAAAACTAGTCCACTTGATTGGAATGCTAGGATGAAGATTGCACTTGGTGCAGCGAGGGGATTGGCATATCTCCATGAAGATTCAAATCCCTGTGTCATACACCGGGACTTCAAGTCTAGCAACATCTTGTTGGAACATGATTTTATGCCTAAGGTTGCAGATTTTGGATTGGCTAGAACAGCACTGGATGGAGGAAACAAGCACATCTCCACACATGTTATGGGAACATTTGGGTACCTAGCTCCTGAATATGCAATGACTGGCCATCTTCTTGTCAAAAGTGATGTGTACAGCTATGGAGTTGTACTCCTTGAGCTCCTAACAGGAAGAAAGCCCGTGGATTTGTCACAACCAGCAGGACAAGAAAACCTCGTGGCTTGGGCTCGTCCACTTCTTTCAAGCAAGGAAGGTTTACAGACAATCATAGACCCAGCTATAGAGCCCTATGTATCTTCTGAAGTTGTGGTAAAAGTTGCAGCAATTGCATCAATGTGTGTGCAGCCAGAAGTCTCTCAACGCCCTTTCATGGGTGAAGTTGTTCAGGCATTGAAGCTGGTTTGCTGCGAGTTTGATGATACAAGCATTATAAGATCAAGGAGCTTTCATGAAGAGAATCTTCCAACCGTTGGAGATAGGAAATTTTTAAGTATTTCAGGTGGGGCAATGGATTTTCAGATATTAACAGAATCAAAGTTGTTCAGTACATCATCAGGCCATGAATTTGAGTCCTTCAGAAGGCATTCTGCTTCAGAGGCTCTAACAACAGAGAAGAAAAAGAAGTTATGGCAGAAATTGAGAAGTTCATCAGGAGGGAGCATTAGTGAGCATGGGTTGTCAAACTTCCCCACACCTTGA	2442	0.432	MGLQLIFLLFKLHLVFSAPQLHEYAATNLHHSRRHSSIALPPSESPSRVPASIALPPSRSSSQVRSKRWTHGFVDSPILHHNYHHSRSKSGNPTPTHNHRGPSVLQSPPPFPSPMTWDLPAPAPAPAPSPTVLPGHLTALSPSSRGLPLQSSSNKMKNPSPSPVLALPPPPPNRVTCSEPFTYTPPGSPCGCVWPLQVKLRISIAIYKFFPLVSELAEKIAASVLLNRSQVRIVGADAVNHQLEKTTVLISLVPKEVNFDDATAFLIYKKFWHREILTDASLFGAYEVLYVHYPGLPPSPPSTPSSIYSVDDGPCPGYDNNGTIMKPLGVDLPMNKRQGIGGSGSMIIIIVLSCVTVSVLFIGVAWLYLLKCSSCAQEPEHILDSSIPSSSKPSGAVRSLTYGSMPGSGSMSFSSGMIIYTGTARTFTLDDIEKATNNFDASRIVGEGGFGLVYKGVLNDGRDVAVKILKRYDHHGGREFLAEVEMLSRLHHRNLVKLIGICMENQTRCLIYELIPNGSVESHLHGADKKTSPLDWNARMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEHDFMPKVADFGLARTALDGGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSQPAGQENLVAWARPLLSSKEGLQTIIDPAIEPYVSSEVVVKVAAIASMCVQPEVSQRPFMGEVVQALKLVCCEFDDTSIIRSRSFHEENLPTVGDRKFLSISGGAMDFQILTESKLFSTSSGHEFESFRRHSASEALTTEKKKKLWQKLRSSSGGSISEHGLSNFPTP	813

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere12g1427	813	SUPERFAMILY	Protein kinase-like (PK-like)	418	712	IPR011009	-
	Dere12g1427	813	FunFam	receptor-like serine/threonine-protein kinase ALE2	412	514	-	-
	Dere12g1427	813	ProSitePatterns	Protein kinases ATP-binding region signature.	445	467	IPR017441	GO:0005524
	Dere12g1427	813	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	561	573	IPR008271	GO:0004672\|GO:0006468
	Dere12g1427	813	MobiDBLite	consensus disorder prediction	105	131	-	-
	Dere12g1427	813	ProSiteProfiles	Protein kinase domain profile.	439	715	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Dere12g1427	813	MobiDBLite	consensus disorder prediction	82	169	-	-
	Dere12g1427	813	Pfam	Protein tyrosine and serine/threonine kinase	442	712	IPR001245	GO:0004672\|GO:0006468
	Dere12g1427	813	Gene3D	Phosphorylase Kinase; domain 1	412	514	-	-
	Dere12g1427	813	Gene3D	Transferase(Phosphotransferase) domain 1	515	727	-	-
	Dere12g1427	813	MobiDBLite	consensus disorder prediction	143	160	-	-
	Dere12g1427	813	MobiDBLite	consensus disorder prediction	88	103	-	-
	Dere12g1427	813	FunFam	Receptor-like serine/threonine-protein kinase ALE2	515	732	-	-
	Dere12g1427	813	MobiDBLite	consensus disorder prediction	35	67	-	-
	Dere12g1427	813	PANTHER	OS01G0750732 PROTEIN	169	730	-	-
	Dere12g1427	813	CDD	STKc_IRAK	445	713	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere12g1427	Dere-ChrDere12	26269421	26274114	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere12g1427	177	806	Receptor kinase-like Gene Family	AT5G56890	57.496	0.0	714

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_Extensin	Dere12g1427		PK_Tyr_Ser-Thr	8.2e-47	CL0016