Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1422 ATGAAGGGTTTGATGTTTCACCAGCAACAGCAACAAGTAGTGGAAGAGAACATGTCTAATTTGACTTCTGCATCTGGTGAGGCCAGTGTTTCCTCAGGCAACAGAAACGAAATTGGCACCAATTATCCTCCTCAACCATACTTTGCTTCACCACCAACTCAAACTCAGCCTGTGAAGAAAAAGAGAAACCATCCTGGCAATCCAGACCCAGATGCTGAAGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCAACAAACCGGTTCATCTGTGAGATCTGTAACAAAGGATTTCAAAGAGACCAAAATCTTCAACTTCACAGAAGAGGGCACAATTTGCCATGGAAGCTGAAGCAGAGAACAAACAAAGAGGTGAGGAAGAAGGTGTACGTGTGCCCAGAAGCCTCATGTGTGCACCATGACCCGGCAAGGGCACTTGGGGACCTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGATAAGTGCTCTAAGAGGTATGCAGTTCAATCAGATTGGAAAGCTCACTCCAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGAGACAGTTTCATAACCCACAGGGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGAGGAAACTCCCTTCTTCCCTCTCAATCAGCTAGTTCTTCAGCACCTCACATGCTAAATCTCCAAAACCAGTTTAATAATCCCCAGGATCTCCATTCCATCCCATTGAAGAAAGAGCAGCAAAGTTTCAACCTTAGGCCAGAAATACCCCCTTGGCTAGCCTGCCCTCCTGGCCCACCCAGCTGCATTGATCTCTCCTCCCCATCATCATCATCAATCTTCTCCACGAGATTAGATCAGGACTTATCTCAAACACCTCACAGGCAAGATCTGAGTCTCCATGAAAACCCTAACCCTAGCCTTGGCCCCACCCTCCCTGCCTACCAACCAGCGCCTTCCCCGCACATGTCAGCTACAGCCTTGCTGCAGAAAGCAGCCCAAATGGGTGCAACCATGACCAAAACTGGCTCCTCCGCACCAGCCATGATTAGGACCCACCAACAGACTCACGTGCCTCATCCTGCTGACTCTGCCACCAATTCAATCTCATGTAGTGGTAATTTTGGTTTGAATTTGTCATCACGTGAAGCTGCAGTGCTACTCCCTTCTGCTTCTTCTGCTGCTAGTACTACTGCTGCTGCTGCTTCTTCCTCAGGTGTTCCTCCTCCCCCCTTCCTTCTTCATGATGTTATGAGTTCTTTCTCTGGTACTTCTGGTGGATTCGAAGGAACTTCTTTTGAGGATGCCTTTGGTGGGATTTTGAATTCCAAGAATAAAGATGGAAACTTTCTTGACACCTTTTCCCAAACACCCACCGCCGCTGTCAGCCATCTTAGTGGCGCCGCCGATGACCGTGGCGGCGGCCGTGGGAGTGAAGGTTTGACGAGAGACTTCTTGGGTCTTAGACCTCTCTCTCACAATGAGATTCTCAGCATTGCTGGAATTGGAAACTGCATGAACCCCTCTTCCCATGATCAAAAGAATCAATCCCAAAAGCCCTGGCAAGGTTAG 1611 0.486 MKGLMFHQQQQQVVEENMSNLTSASGEASVSSGNRNEIGTNYPPQPYFASPPTQTQPVKKKRNHPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKEVRKKVYVCPEASCVHHDPARALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGNSLLPSQSASSSAPHMLNLQNQFNNPQDLHSIPLKKEQQSFNLRPEIPPWLACPPGPPSCIDLSSPSSSSIFSTRLDQDLSQTPHRQDLSLHENPNPSLGPTLPAYQPAPSPHMSATALLQKAAQMGATMTKTGSSAPAMIRTHQQTHVPHPADSATNSISCSGNFGLNLSSREAAVLLPSASSAASTTAAAASSSGVPPPPFLLHDVMSSFSGTSGGFEGTSFEDAFGGILNSKNKDGNFLDTFSQTPTAAVSHLSGAADDRGGGRGSEGLTRDFLGLRPLSHNEILSIAGIGNCMNPSSHDQKNQSQKPWQG 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1422 536 Pfam Zinc-finger double-stranded RNA-binding 88 110 IPR022755 -
Dere12g1422 536 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Dere12g1422 536 SUPERFAMILY beta-beta-alpha zinc fingers 87 184 IPR036236 -
Dere12g1422 536 FunFam protein indeterminate-domain 12-like 67 135 - -
Dere12g1422 536 SMART c2h2final6 129 159 IPR013087 -
Dere12g1422 536 SMART c2h2final6 88 110 IPR013087 -
Dere12g1422 536 SMART c2h2final6 164 184 IPR013087 -
Dere12g1422 536 FunFam protein indeterminate-domain 5, chloroplastic-like 142 221 - -
Dere12g1422 536 Gene3D Classic Zinc Finger 143 221 - -
Dere12g1422 536 Gene3D Classic Zinc Finger 69 138 - -
Dere12g1422 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 110 IPR013087 -
Dere12g1422 536 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 522 IPR031140 -
Dere12g1422 536 MobiDBLite consensus disorder prediction 1 43 - -
Dere12g1422 536 MobiDBLite consensus disorder prediction 298 334 - -
Dere12g1422 536 MobiDBLite consensus disorder prediction 298 319 - -
Dere12g1422 536 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1422 Dere-ChrDere12 26168152 26170507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1422 18 536 IDZ Gene Family AT3G13810 48.621 1.21e-142 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere12g1422 zf-C2H2_jaz 7.9e-05 CL0361