Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1415 ATGGATTATTATTCCCAAGGGAGGCAATTAGAAGCTTACCCTGTCACCCACAATGGCGAAGAATTTCCTGAAGAAATTGACCCGCAACAAGATGAATTATATTCGGGGCATGATTTTGATCCGAACGATAACTTAAATAGTGCGGGTATTACGATAAATCCCACATCCAATCGTCGTGACTCGTCTTCAGGAAAACTCTTCGTTGGTGGCATATCCTGGGAGACTAGTGAAGAGTCCTTTTTTAAGTACTTCAACAAATATGGAGAAGTAATAGATTCTGTGATTATGATGAATAAACATTCTGGAAGGCCACGGGGGTTTGGCTTTGTAACATTTGCTGATTCTGCTGTAGCTGATAAAGTATTGGCGCAGGAACATACAATAGATGGCAGAGTGGTTGAAGTCAAGAGGACAGTTCCTAGGGAGGACATGGAGGGTCTAAGAGTATTGAAAACAAAGAAGATTTTTGTTGGAGGAATACCCCAATTTTTCACCGATGATGAGTTGAAGGAGTATTTTTTACCTTATGGTAGTATTGCTGAACACCAAATTATGCTTGATCATAAGACTGGGCGATCTAGGGGCTTTGGGTTTGTCACTTTTGATAGTGAAGATTCGGTGGAAAAGGTTTTTTCTGTGGGAAAAATACATGAACTTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAACCCAAAAGAGCTGGGTTTGATTGCAGCAGCAGTTCACGAAAGTCATATGGTGGTTTTGGCCGTGGGACAGATGGATTGGGTAGGCATAGTTCTAGGGGACGTAATGATGGAAAAAGGGGTAGGCCATATGTAGACTGCGGCATGAATGAGGGATATAGCAATTTCGAGGAGGGGAACTATGGTGGAATTACTGCCAATTCTTATGTTGGCTATGGTGGATATAATTATGGATTTGGGTATGGCGTACCAATGTATTGCTATGGCGGTTATGGAGTCAACACCTACGGTAATCCTGGTGTGTATGGTGGTGGCATTGCTGTGTATGGAGATGGTAAAGCATATGGAAAAGCTGGTGGTTACAATCGCACCAGCGGCTACGACGGTGGCTCGGGCAAAGTGGCAGAGAAGGATGATGGTCATGCTACCGAAAGATACCATCCTTACTGGAAGTGA 1143 0.4339 MDYYSQGRQLEAYPVTHNGEEFPEEIDPQQDELYSGHDFDPNDNLNSAGITINPTSNRRDSSSGKLFVGGISWETSEESFFKYFNKYGEVIDSVIMMNKHSGRPRGFGFVTFADSAVADKVLAQEHTIDGRVVEVKRTVPREDMEGLRVLKTKKIFVGGIPQFFTDDELKEYFLPYGSIAEHQIMLDHKTGRSRGFGFVTFDSEDSVEKVFSVGKIHELGGKQVEIKRAEPKRAGFDCSSSSRKSYGGFGRGTDGLGRHSSRGRNDGKRGRPYVDCGMNEGYSNFEEGNYGGITANSYVGYGGYNYGFGYGVPMYCYGGYGVNTYGNPGVYGGGIAVYGDGKAYGKAGGYNRTSGYDGGSGKVAEKDDGHATERYHPYWK 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1415 380 MobiDBLite consensus disorder prediction 40 63 - -
Dere12g1415 380 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 56 379 - -
Dere12g1415 380 FunFam Heterogeneous nuclear ribonucleoprotein 1 63 145 - -
Dere12g1415 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 140 IPR000504 GO:0003723
Dere12g1415 380 MobiDBLite consensus disorder prediction 1 64 - -
Dere12g1415 380 SUPERFAMILY RNA-binding domain, RBD 151 255 IPR035979 GO:0003676
Dere12g1415 380 SUPERFAMILY RNA-binding domain, RBD 57 144 IPR035979 GO:0003676
Dere12g1415 380 SMART rrm1_1 65 136 IPR000504 GO:0003723
Dere12g1415 380 SMART rrm1_1 154 227 IPR000504 GO:0003723
Dere12g1415 380 MobiDBLite consensus disorder prediction 247 272 - -
Dere12g1415 380 MobiDBLite consensus disorder prediction 361 380 - -
Dere12g1415 380 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 231 IPR000504 GO:0003723
Dere12g1415 380 MobiDBLite consensus disorder prediction 18 38 - -
Dere12g1415 380 MobiDBLite consensus disorder prediction 257 272 - -
Dere12g1415 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 222 IPR000504 GO:0003723
Dere12g1415 380 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 133 IPR000504 GO:0003723
Dere12g1415 380 Gene3D - 62 145 IPR012677 -
Dere12g1415 380 MobiDBLite consensus disorder prediction 357 380 - -
Dere12g1415 380 Gene3D - 148 274 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1415 Dere-ChrDere12 26104743 26107205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1415 43 243 Eukaryotic Initiation Factors Gene Family AT1G71770 29.864 1.84e-13 70.1