Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1408 ATGATGGCCTCTTCTTCTCTGCTTTCACGAATAAAACATGATGTCTTTATCAGTTTCAGAGGCGCAGACGTCAGATTTGGGTTTCTTAGCCATTTGAGAAAGGAGATGCAGCACAAGCAAATTGATGCCTACGTAGACGACAAGCTTGAGAGAGGAGGTGAAATATCACTATCGCTTCTCAGAGCAATAGAGGAATCACTCATTTCATTGATCATCTTTTCAAGGGACTATGCTTCTTCAAAGTGGTGCTTAGAAGAGCTCGTGAAGATTATTGAGTGCATGGACAAATATAGACAGATTGTAATCCCTGTTTTCTATAACATAGATCCTACTGATGTGAGACATCAGAAGGGGTCTTATGGAGATTCTTTAGCTGAACTCGAAAAATTTTATAAGGAAAAGATTCATACTTGGAGATCAGCTTTGAATAAAGCTGCTAATTTATCTGGATTTCATTCATCAAATTATGGGGATGAAGTTGAGCTTATAGAAGGAATTGCTAAATCTTTGTCAGTAAGGTTGAATACTATGTACCAAAGTGACTTAACAGACCTTGTTGGAATTGATGAAAGAATTGATGATTTAGAATCACTAATGGGCCAAGGGTTAGAAGATGTTCGTGTTATTGGAATTTGGGGCATGGGGGGTATTGGTAAGACAACTATCGCAGCCTCAGTATTTAACCGATTTTGTTTTGAATACGAAGGATGCTGTTTTTTGGCAAATGTAAGAGAAGAATCTGAGAAATATGGGATTATTTACTTGAAGAATAAAATTCTTTCTATACTACTTAAGGAAAATAATTTATATATTGGCACGCCAAATGGAATTCCCCCTTATGTTAAGAGAAGGCTACTCCGGAAAAAAGTTCTTCTTGTTCTTGATGATATCAACGATCCAGAACAACTAGAAAATTTAGTCGGAGCACTTGATTGCTTTGGATCAGGTAGTCGAATTATTATAACAACCAGAGATAAGCAAGTGCTTGGTAAAAAAGTTGATAAAGTATATGAGGTTAAGCCATTGATGTTTGATGATGCTGTTAAGCTTTTTATGATGAATGCTTTTGAGAAAATTTATCTAGATATGGAGTGGATTGAACTATCAAAGAATATGATTAGTTATGCTAATGGCATTCCATTAGCTCTAAAAGTTTTGGGTTCTTTTCTTTTTGGCAAAAGCAAGGAAGAATGGCAAAGCCAACTTGAGAAACTAAAAAAAATGCCTCCCGCAAAAATTCAGGATGTATTGAGATTGAGTTATGATAAACTGGACAGGGAAGAGAAGAACATATTCTTGTATATTGCGTGTTTTCTCAAAGGATATAAATCACAGCAAATAATAGTTTTACTGAATGCTTGTGGTTTCTCAACTATAATTGGGTTAAAGGTCCTCCAAGACAAAGCTCTGATAAGTGAAAAAACAGCCACGGGAATATCAAGAATATTTATGCATGACTTGATACAAGAAATGGGTCGGGAGATTGTTCGTGAAGAATCAATTGATGATCCTGGAAAACGCAGTCGATTATGGGATGCTAACGAGATATATCAAGTATTAAAACATAACTTGGGGACTAAAGCCATTCAAAGCATAACTCTGAATGTGGCAAAAATTGAAGAGCTCTCCCTAACTCCTCAGGTCTTTGCTGAGATGTCTCATCTAAAATTTCTTAATTTTTCCCAGCATGATTTTGAAGAACAAATCCTACGCCTTCCGCAAGGCCTTGAGTCTTTGCCAAATGAAGTAAGATTTTTTCGTTGGATTAGTTATCCTCTCAAATCCTTACCTTCCACATTCCGTCCAGAAAGTCTTGTTGAACTCAACATGACTTGGAGCCGTGTGGAAAAACTATGGGATGGAGTTCTGCGTCTTGTGAACTTAAAGAAAATTGACCTCAGTAACTCCAAGCATCTATTGGAACTCCCAGATTTTTCTATGGCCAAAAACCTTGAAGAAGTAGAACTTTCCAACTGTAAAAGCTTGCCTAAGGTTCATCCATCTATTTTAGCCATCCACAAGCTAGTGAGATTGAATCTAACATACTGCAAATCACTTACCAGTCTTAGAAGTGATGTCCATTTAAGATCCCTTAGTGATCTCTCTCTTGGGCAATGCTCAAGTCTCAACAAATTCTCAGTGACATCAGATAATATGAGGAATTTGAGTTTGGAAGGTACAGCTATCAATGAATTGCCATCATCCATGAGGCTTCTGATCAGACTTGAAACATTAAATTTAAATCGTTGTAGAAGTCTGAAGCATCTTCCAAGCAGGTTTGCTAACCTGAGCCATCTTCAAAAACTTTGGATCTATGGTTGTGTGCAGCTTGATGCATCGAATTTACACTTCCTACTTGATGGCTCAAGGCTATTAGAAACATTGTTGCTGGAAGATTGTCATAATTTTGATGAACTTCCAGACAACATCAGATTCTTATCCTCATTGCGGCATTTATCACTTAAAAAAACAGATATTAAGTGCTTGCCTGCAAGCATCAAGCTTCTTCCACAACTTGAAAAACTTGACTTGAGTAATTGTAGGAGACTTCAGTCTTTGCCTGAGATTCCACCTTCCATTAAAGAACTTTATGCCACTAACTGCACTTCCCTGGAGAGAGTAGTGTTTTCTTCCACGGCTGCTCATCAATTGAAAGACAAAGTACGTGTTCGCACCAGATTCCAGAATTGCGTGAAATTAGATGAAAATTCACTCAGTGCTATTGGAGTGAATTCTCATGTCAACATAAAGAGATTGGCATATGAACATTTGTCTCTAGGACAAAGTAAGATCCTTGATGGTCCAGTTGATGTTATTTACCCCGGAAGCAATGTTCCGGAGTGGTGCATAAACAGGGCAAAGCAGTCTTCGATAACTATTGACTTGTCTTCTGCTCTTCCTTCCATGTTTATGGGTTTCATTTTCTGTGTGGTTGTTTCTGAGTTCTTATCAAATGACAAGAACTTTGTGGGATGTGACTGCTACTTCGAACGTAATGGTGAAAGGGACATGACTATGGGTGCATGGACTAGCATACATGCTTGCGAATTTATGTCTGATCATGTGTGTCTATGGTACGATGAAGGATGTTGTTTGAAAACAAGTGAAAGCATGGAAGAAGTTGAGGCCAATAATCAGAAGGTTTCATTTGAGTTCTTTGCTCAAACTGAAAATACTTGGGAGAAGAGGAAGGATATCGTGATAAAAGAGTGTGGAGTATGCCCCATATATGCCTCAGAATATCACAATTTCATTGAACAGACGAAGTTGAAGTTAGAGGCACAACATAGAGCAATTGAAATGGGAGTTAATGGAAACATTGATAAGAGGAGAGATGAGGAAGACACAACCCCTTTAGCACAAAAGTCCAATGAATATGTCTTTCCACCACTCCCAATAGGAACTTGGAAGAAAGCAACACAGGGCTTGAAGGATCTCATCTACCTATGA 3450 0.3794 MMASSSLLSRIKHDVFISFRGADVRFGFLSHLRKEMQHKQIDAYVDDKLERGGEISLSLLRAIEESLISLIIFSRDYASSKWCLEELVKIIECMDKYRQIVIPVFYNIDPTDVRHQKGSYGDSLAELEKFYKEKIHTWRSALNKAANLSGFHSSNYGDEVELIEGIAKSLSVRLNTMYQSDLTDLVGIDERIDDLESLMGQGLEDVRVIGIWGMGGIGKTTIAASVFNRFCFEYEGCCFLANVREESEKYGIIYLKNKILSILLKENNLYIGTPNGIPPYVKRRLLRKKVLLVLDDINDPEQLENLVGALDCFGSGSRIIITTRDKQVLGKKVDKVYEVKPLMFDDAVKLFMMNAFEKIYLDMEWIELSKNMISYANGIPLALKVLGSFLFGKSKEEWQSQLEKLKKMPPAKIQDVLRLSYDKLDREEKNIFLYIACFLKGYKSQQIIVLLNACGFSTIIGLKVLQDKALISEKTATGISRIFMHDLIQEMGREIVREESIDDPGKRSRLWDANEIYQVLKHNLGTKAIQSITLNVAKIEELSLTPQVFAEMSHLKFLNFSQHDFEEQILRLPQGLESLPNEVRFFRWISYPLKSLPSTFRPESLVELNMTWSRVEKLWDGVLRLVNLKKIDLSNSKHLLELPDFSMAKNLEEVELSNCKSLPKVHPSILAIHKLVRLNLTYCKSLTSLRSDVHLRSLSDLSLGQCSSLNKFSVTSDNMRNLSLEGTAINELPSSMRLLIRLETLNLNRCRSLKHLPSRFANLSHLQKLWIYGCVQLDASNLHFLLDGSRLLETLLLEDCHNFDELPDNIRFLSSLRHLSLKKTDIKCLPASIKLLPQLEKLDLSNCRRLQSLPEIPPSIKELYATNCTSLERVVFSSTAAHQLKDKVRVRTRFQNCVKLDENSLSAIGVNSHVNIKRLAYEHLSLGQSKILDGPVDVIYPGSNVPEWCINRAKQSSITIDLSSALPSMFMGFIFCVVVSEFLSNDKNFVGCDCYFERNGERDMTMGAWTSIHACEFMSDHVCLWYDEGCCLKTSESMEEVEANNQKVSFEFFAQTENTWEKRKDIVIKECGVCPIYASEYHNFIEQTKLKLEAQHRAIEMGVNGNIDKRRDEEDTTPLAQKSNEYVFPPLPIGTWKKATQGLKDLIYL 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1408 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 435 IPR027417 -
Dere12g1408 1149 Gene3D - 8 175 IPR035897 -
Dere12g1408 1149 FunFam Disease resistance protein RPS4 526 717 - -
Dere12g1408 1149 Pfam TIR domain 12 187 IPR000157 GO:0007165
Dere12g1408 1149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 713 IPR044974 GO:0006952
Dere12g1408 1149 FunFam Disease resistance protein (TIR-NBS-LRR class) 9 176 - -
Dere12g1408 1149 Gene3D - 176 339 IPR027417 -
Dere12g1408 1149 Pfam C-JID domain 940 1080 IPR045344 -
Dere12g1408 1149 SUPERFAMILY L domain-like 484 880 - -
Dere12g1408 1149 Gene3D Ribonuclease Inhibitor 506 716 IPR032675 -
Dere12g1408 1149 Gene3D Ribonuclease Inhibitor 717 906 IPR032675 -
Dere12g1408 1149 PRINTS Disease resistance protein signature 208 223 - -
Dere12g1408 1149 PRINTS Disease resistance protein signature 376 390 - -
Dere12g1408 1149 PRINTS Disease resistance protein signature 834 850 - -
Dere12g1408 1149 PRINTS Disease resistance protein signature 284 298 - -
Dere12g1408 1149 ProSiteProfiles TIR domain profile. 11 174 IPR000157 GO:0007165
Dere12g1408 1149 SMART till_3 12 148 IPR000157 GO:0007165
Dere12g1408 1149 Pfam NB-ARC domain 198 421 IPR002182 GO:0043531
Dere12g1408 1149 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 151 IPR035897 -
Dere12g1408 1149 Gene3D - 342 425 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1408 Dere-ChrDere12 25838711 25842453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1408 13 849 WRKY Transcription Factor Family AT4G12020 34.393 4.77e-128 429