Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1396 ATGGCCATTATAAGGGGTACAAGTGGTGCAGGGGGTGACAATGCAGCCTTTATCCCTTTGCCACAAACCCAGAGTGGGCACCATATGTGTAAGAACAGAGAACTGAGAAGAGAAGAGAGAGGGTGGGAGAAGAAGAGAGAAGAGAAGGCGATATCTATCATTCACAGTAGCAGAATGGGGCATCACTCTTGCTGCAACAAGCAGAAGGTGAAAAGAGGGTTATGGTCACCTGAAGAGGATGAAAAGCTCATCAACTACATCACCACTTATGGCCACGGATGCTGGAGCTCTGTCCCTAAACTTGCTGGCCTTCAAAGGTGTGGAAAAAGTTGCAGACTAAGATGGATAAATTATCTAAGACCTGACTTGAAACGAGGAAGCTTCTCTTCTCAAGAAGCAGCTCTCATTATCGAACTCCATAGCATTCTAGGCAATAGGTGGGCTCAGATAGCTAAGCACCTACCCGGAAGAACAGACAATGAGGTGAAGAACTTTTGGAACTCAAGCATAAAGAAGAAGCTCCTTTCTCATGAAATGCTTCCTTCTTCTTTATCCACATTTTCTGATAATCTTCTTCATCATAATGCTTCCGTTGAACCCTTCTTCCCCTTAACTACTTCTGCAAGCCCTAATCTGATCTTTAACTCTCATCTTCATCATCATCATCATCTTCTTCAACCTGATCATCATCCTCAGCTATACCTTCCCGCTCCATCACCAATCCCACAAGGTCTCAATGATCATGATCATAATACTGATGATATCAAAGTAGACATCACCAATTATAACCCCAATAACAGTTTCCTTCATGTCCAGAATCCTTTCCCAGAAACACCACCCAGTATTATTATTCCATCTTCATATGAAGATACTAATAATAATAATAATAATAATAATAGTACTACATGGTCGATATTGGGTCTGAATAATCCATATCAAGAAATTCAAATTACCAAAAGCGATCATCATTCTGTTGCTGAGAAATTCATCAACCCCAGTTCAATATTAATGCAGCAATACGATCGCGTTAGTCAAGATCACTTGGTGGAGTCCATTGTGCCCAGAATCTGCGAGAGCTTTGAGGATTATGGATTTAGCAGTGTCCCATATTCTTCATCATCTTCTTCCTCACAAGAACTACAAGACCCTCTTGCAAGAATCCAATGTTACCCATCTGGTTTTTTCCCACAAGATCAAACTTTTTCAGCCAATCAAATGGAGTACATTGATGCTATCCTATCATCGTTGCCCACGTCAACAGGAAACCCTATTGTTCCTTCTAGCTGGGAGCCTTGA 1296 0.4151 MAIIRGTSGAGGDNAAFIPLPQTQSGHHMCKNRELRREERGWEKKREEKAISIIHSSRMGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSSQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHEMLPSSLSTFSDNLLHHNASVEPFFPLTTSASPNLIFNSHLHHHHHLLQPDHHPQLYLPAPSPIPQGLNDHDHNTDDIKVDITNYNPNNSFLHVQNPFPETPPSIIIPSSYEDTNNNNNNNNSTTWSILGLNNPYQEIQITKSDHHSVAEKFINPSSILMQQYDRVSQDHLVESIVPRICESFEDYGFSSVPYSSSSSSSQELQDPLARIQCYPSGFFPQDQTFSANQMEYIDAILSSLPTSTGNPIVPSSWEP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1396 431 PANTHER MYB DOMAIN PROTEIN 55 59 364 - -
Dere12g1396 431 FunFam Myb transcription factor 127 174 - -
Dere12g1396 431 Pfam Myb-like DNA-binding domain 72 119 IPR001005 -
Dere12g1396 431 Pfam Myb-like DNA-binding domain 125 167 IPR001005 -
Dere12g1396 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 124 174 IPR017930 -
Dere12g1396 431 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 123 IPR017930 -
Dere12g1396 431 SUPERFAMILY Homeodomain-like 69 166 IPR009057 -
Dere12g1396 431 Gene3D - 127 174 - -
Dere12g1396 431 FunFam MYB transcription factor 64 124 - -
Dere12g1396 431 SMART sant 71 121 IPR001005 -
Dere12g1396 431 SMART sant 124 172 IPR001005 -
Dere12g1396 431 Gene3D - 69 125 - -
Dere12g1396 431 CDD SANT 127 167 IPR001005 -
Dere12g1396 431 ProSiteProfiles Myb-like domain profile. 67 119 IPR001005 -
Dere12g1396 431 ProSiteProfiles Myb-like domain profile. 120 170 IPR001005 -
Dere12g1396 431 CDD SANT 75 119 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1396 Dere-ChrDere12 25607803 25610133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1396 59 218 MYB Transcription Factor Family AT3G13890 73.143 1.55e-80 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere12g1396 Myb_DNA-binding 1.7e-14 CL0123