Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1388 ATGGAGCCTCGAGTAGGGAACAAGTTTCGTCTTGGCCGGAAGATTGGTAGCGGATCGTTCGGGGAGATCTATCTTGGTACTAATATTCAGACTAATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAGACCAAGCACCCTCAGCTGTTGTATGAATCCAAGTTGTATAAAATACTGCAGGGAGGAACTGGAATCCCCAATGTGAGATGGTTTGGTGTTGAAGGAGACTACAATGTGCTAGTGATGGATTTGCTGGGGCCTAGTCTTGAGGATTTATTCAATTTCTGTGGTCGGAAATTGTCGCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTGTTCATTCCAAATCTTTTTTACATCGGGACATCAAGCCAGACAACTTTCTCATGGGTTTGGGAAGGCGTGCAAATCAAGTATACGTCATTGACTTTGGTCTTGCTAAGAAATACAGAGACACCTCTACCCATCAGCATATTCCTTACAGAGAGAATAAGAATTTGACAGGAACTGCTAGATATGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGGGATGACTTAGAGTCACTTGGATATGTTCTTATGTATTTTTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAAGCAGGTAACAAGAAGCAAAAGTATGAGAAGATCAGTGAGAAGAAAGTTTCTACTTCTATTGAGTCTCTGTGTCGTGGATATCCCTCAGAATTTGCATCATACTTCCATTACTGTCGGTCTCTACGTTTTGATGACAAGCCAGATTATGCTTATCTGAAAAGACTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTACGTCTTTGATTGGACTATCCTGAAATATCAGCAATCCCAAACCGTTACTCCTCCTGGCCGTGCTATTGTTCCTGGTGCTGGACCAAGTTCTGGCATGCTGCCAGCTGCTGTTGGAAATGCTGATAGACATTCAGGTGTGGAAGATGGCAGACACACTGGTTGGTCTTCATCAGATCCTACTCGTAGAAGAAATTCTGGACCTATTGCTAATGATGGCATCTTATCTAGACAAAAAGCCCCAGTTGCAAGTGAATCAAATTTATCAAAAGATGTAATGTTGTCTAGTTCTAATTTGTTCCGGTCAAGTGGAACTTCAAGGAGAGCTGCAGTATCCAGCAGTCGGGATGCAGTTATTGTTGGCAGTGAGACTGAGCCCTCCCGCCCTCTTGCCATTGATCCAAGTCCAGGAGCACTCCGTAAAATCTCTGGTGCTCAAAGAAGTTCACCTATTGTATCAGCAGAGCAGAACAGAACTTCATCTGGCAGAACCGCATCAAACATCAAGAACTTTGAGTCAACTCTCAGAGGCATTGAGAGCCTGCATTTCAGTGACGAAAGGGTACAGTATTAG 1428 0.4293 MEPRVGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKHPQLLYESKLYKILQGGTGIPNVRWFGVEGDYNVLVMDLLGPSLEDLFNFCGRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCRGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQTVTPPGRAIVPGAGPSSGMLPAAVGNADRHSGVEDGRHTGWSSSDPTRRRNSGPIANDGILSRQKAPVASESNLSKDVMLSSSNLFRSSGTSRRAAVSSSRDAVIVGSETEPSRPLAIDPSPGALRKISGAQRSSPIVSAEQNRTSSGRTASNIKNFESTLRGIESLHFSDERVQY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1388 475 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Dere12g1388 475 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1388 475 FunFam Casein kinase I isoform delta-like 1 308 - -
Dere12g1388 475 CDD STKc_CK1_delta_epsilon 8 282 - -
Dere12g1388 475 FunFam Putative Casein kinase I 1 85 - -
Dere12g1388 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Dere12g1388 475 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1388 475 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1388 475 MobiDBLite consensus disorder prediction 399 454 - -
Dere12g1388 475 MobiDBLite consensus disorder prediction 329 343 - -
Dere12g1388 475 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Dere12g1388 475 Gene3D Transferase(Phosphotransferase) domain 1 1 306 - -
Dere12g1388 475 PANTHER CASEIN KINASE-RELATED 9 381 - -
Dere12g1388 475 MobiDBLite consensus disorder prediction 431 454 - -
Dere12g1388 475 MobiDBLite consensus disorder prediction 302 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1388 Dere-ChrDere12 25536733 25541638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1388 8 213 MAP Kinase Kinase Kinase AT3G06030 27.727 2.42e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Dere12g1388 Pkinase 1.2e-26 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1388 12 25536733 25541638 Dere11g1503 11 27639022 27646125 CCT