Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1384 ATGAATGAGCTATGCTGGATCCTGGAGGAGTGGGCAAAGCGGTGTCTGACACTGAAAGTTTTACCTTCAAGATTGCTGATATCCGTAGGCCCTTTGAAATTTCACCTCCAGATATCAAAATTGCAGAAGTTTAATGCTTAAAGTTCCTTGGAACTCCCCTTTACACTAGTTTTTCATGTTGCAGTTATGGCAGGTTTGGCTCCAGAAGGAACGCAGTTTGATGCTCGTCAATATGATGCTAAAATGAATGAATTGCTTTCTGCTGATGGACAAGAATTTTTCACCTCATATGACGAGGTCTATGATACTTTTGATGCAATGGGATTACAAGAAAATCTTCTGAGAGGCATCTATGCTTATGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGTCTTGATGTCATTCAACAGGCTCAGTCTGGAACTGGCAAGACAGCAACATTCTGCTCTGGAATTTTGCAGCAACTTGATTATGGTTTAGTTCAGTGCCAGGCTTTGGTTTTGGCTCCAACAAGGGAGCTAGCACAGCAGATTGAGAAAGTTATGCGAGCTCTTGGTGATTACCTTGGTGTTAAGGTTCATGCTTGTGTAGGTGGTACAAGTGTTCGTGAGGATCAGCGCATTCTCCAAGCCGGTGTCCATGTTGTTGTTGGAACTCCTGGTCGTGTGTTTGACATGCTACGAAGGCAGTCCCTTCGCCCAGATCACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCTCGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTACTGCCAGGTAAAATTCAGGTTGGAGTGTTCTCTGCAACAATGCCTCCAGAAGCTCTCGATATCACTAGGAAGTTCATGAATAAGCCAGTGAGAATCTTGGTAAAGCGTGACGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTCAATGTTGATAAGGAGGAGTGGAAACTAGAGACATTATGTGACCTTTATGAAACACTTGCTATCACCCAGAGTGTCATTTTTGTGAACACTAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGATCATACAGTTTCAGCAACCCATGGTGACATGGACCAAAACACTCGGGATATCATTATGCGTGAATTCCGCTCTGGCTCTTCTCGAGTTCTGATTACCACCGACCTCTTAGCTCGTGGTATTGATGTGCAGCAAGTGTCTCTTGTTATTAACTATGATTTGCCAACCCAACCTGAAAATTACCTTCACCGTATCGGACGAAGTGGACGATTTGGAAGGAAAGGTGTGGCTATAAATTTTGTGACATTGGATGATGCAAGAATGCTTTCTGATATTCAGAAGTTCTATAACGTAACCATAGAGGAGTTGCCATCAAACGTTGCTGATCTGCTCTGA 1428 0.4363 MNELCWILEEWAKRCLTLKVLPSRLLISVGPLKFHLQISKLQKFNAXSSLELPFTLVFHVAVMAGLAPEGTQFDARQYDAKMNELLSADGQEFFTSYDEVYDTFDAMGLQENLLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPGKIQVGVFSATMPPEALDITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDARMLSDIQKFYNVTIEELPSNVADLL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1384 475 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 249 257 IPR000629 -
Dere12g1384 475 CDD DEADc_EIF4A 106 304 - -
Dere12g1384 475 SMART ultradead3 121 318 IPR014001 -
Dere12g1384 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 456 IPR027417 -
Dere12g1384 475 CDD SF2_C_DEAD 315 445 - -
Dere12g1384 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 303 IPR014001 -
Dere12g1384 475 FunFam Eukaryotic initiation factor 4A-III 310 475 - -
Dere12g1384 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 314 475 IPR001650 -
Dere12g1384 475 SMART helicmild6 355 436 IPR001650 -
Dere12g1384 475 Gene3D - 310 475 IPR027417 -
Dere12g1384 475 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 102 130 IPR014014 GO:0003724
Dere12g1384 475 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 99 459 - -
Dere12g1384 475 Gene3D - 92 309 IPR027417 -
Dere12g1384 475 FunFam Eukaryotic initiation factor 4A-II 90 309 - -
Dere12g1384 475 Pfam DEAD/DEAH box helicase 127 288 IPR011545 GO:0003676|GO:0005524
Dere12g1384 475 Pfam Helicase conserved C-terminal domain 328 436 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1384 Dere-ChrDere12 25517109 25520355 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1384 63 475 Eukaryotic Initiation Factors Gene Family AT1G72730 88.647 0.0 768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1384 12 25517109 25520355 Dere11g1500 11 27627822 27633857 CCT