Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1382 ATGGGAAATCAAAAGCAAAAGTGGACGGCAGAGGAAGAGGAAGCATTGCTCGCCGGAATAGCAAAGCATGGTCCCGGCAAGTGGAAGAACATTCTCAAAGATCCTGAATTTGCACCTTTCCTTACCCACCGTTCTAATATTGACCTCAAGGATAAATGGCGGAACTTAAGTGTTAACACTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATTAAAGCTATTACTCCTGCCCCAGTTGCCAGTGTTCAAAATGCTACTTCTGCTGCTCCAGTTCGTCAGAATGCAGCTTCTGATGCTATCATAGATGATCCTACTCAAAAAGCACAGGATGTCAAGAATGCTCCACGGTATAATGGAATGGTTTTTGAAGCTCTGTCAACAATAAAGGATACTAATGGTTCTGACATAAATGCCATTGTTAGTTTCATTGAGCAAAGGCATGAGGTTCCTCCAAATTTCAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGGTACAAAATTGTTACAAGATAAAAGAAGACACCCCTTCTGGGGCAAAATCACCTCCATTGAAACAAAAGGATATCTGGCAACATCAATCACCGGCCTCTAATTTAGTGGCATCTTATGAGACTGCAAAGGATGCTGCCGACACTGCAGCCTACAGACTAGCGGAAGCTGAGAATAAATCATTTCTGGCTGCTGAGGCAGTCAAGGAGGCAGAAAGACTCTCAAAGTTTGCTGAAGATGCTGATTCAATATTACAGTTAGTGAGAGAGATTTATGAACAATGTTCGCGCGGTGAAACTTTTCTCTTGGCCTAA 837 0.4277 MGNQKQKWTAEEEEALLAGIAKHGPGKWKNILKDPEFAPFLTHRSNIDLKDKWRNLSVNTAAQGSKDKARNPKIKAITPAPVASVQNATSAAPVRQNAASDAIIDDPTQKAQDVKNAPRYNGMVFEALSTIKDTNGSDINAIVSFIEQRHEVPPNFRRALSTRLRRLVAQGKLEKVQNCYKIKEDTPSGAKSPPLKQKDIWQHQSPASNLVASYETAKDAADTAAYRLAEAENKSFLAAEAVKEAERLSKFAEDADSILQLVREIYEQCSRGETFLLA 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1382 278 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Dere12g1382 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Dere12g1382 278 Coils Coil 214 234 - -
Dere12g1382 278 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 184 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere12g1382 278 FunFam Telomere repeat-binding factor 1 8 87 - -
Dere12g1382 278 FunFam Telomere repeat-binding factor 1 2 58 - -
Dere12g1382 278 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Dere12g1382 278 PANTHER SINGLE MYB HISTONE 4 1 277 IPR044597 GO:0003691
Dere12g1382 278 Gene3D - 112 199 IPR036388 -
Dere12g1382 278 SMART h15plus2 114 179 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere12g1382 278 Gene3D - 2 58 - -
Dere12g1382 278 Pfam linker histone H1 and H5 family 118 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Dere12g1382 278 SMART sant 4 59 IPR001005 -
Dere12g1382 278 SUPERFAMILY "Winged helix" DNA-binding domain 116 192 IPR036390 -
Dere12g1382 278 CDD SANT_TRF 6 56 - -
Dere12g1382 278 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1382 Dere-ChrDere12 25503088 25508118 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1382 1 278 Single Myb Histone (SMH) Gene Family AT1G72740 53.004 1.05e-89 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g1382 Linker_histone 2e-10 CL0123