Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1378 ATGACTCTCTCACGAACGGCTTCGAACTTAGGAGAGGGGTCTGCCGTTGTGGTCGCCGCCGGTGCGACTGTGATCGCCATTGATAAGGACAAGAACAGCCAGCATGCGGTCAAATGGGCAGCGGATCACCTCTTGAAGAACTCTTCTTGCACCCTCATCCATGTTCGCACCAAGAGCTTGCATCCCCGTAGGTACTCTTCTCTGTCTACATCCCCATCGCCATGCATGATCACTATCACCGTTATTAAATATCTAAACCTTATAGGAAACATATACGCTTTGGTTGGTGCCGTTATGGGTTGCTATGATGACGATGCTTTCCATAAAGAAGGTCTTCCACCAACGGAAGAAGAATTGCATCAATTTTTTCTTCCCTTACGAGGATTTTGTGCTCGAAAAGGGATTGCAGCAAAGGAGTTAGTCCTGCAGGACCATGATGTTGCAAGTGCCCTTACTGATTATATCGTTAACAACTCTATCAGAAATCTTGTTGTTGGTGCATCTCACCGGAATGCCCTAACAAGGAAATTCAAAGATGTAGATGTGCCAACTCGCTTAGTCAAATCTGTGCCTGAGTCCTGCACAATACATGTTGTATCAAAAGGAAAAGTGCAGAATATCAAACCGATAGGTCATCATCAAAATATAAGCATAAAAGAAACAAGCAGTCCCCGGGAAAATTCTCTAGCGGATTATTTGCATAAGCTTCCTAATACCCCAGATTCTGAAGAAGCAAACAGTCATGGATGCGGGCAAGGTTTAGGCCTTGATAGAGTATCTTTTGGTCAAAATCATAATGCTACGCAAACGGTACAACATAAGCTGAATGGAGAAGCTAATTCACCAAGAAAATCACTGGAAACCTCCTCGCCAAACTCACCAAATCAAAATCCCTATTCATTCATTAGTGACATATCAGGGCCGCCTAGTTTTCAATCAATTGATAAGTTACAGGAGAACCAAGAAGCATCTGTGGACTCAGACAGTTCCAGTAGCCCTTCTTCTGCAAAAACCCCAAAAGGCTTGGAGGCTGAAATAAGGAAGTTAAAACTAGAATTGAAAAAAACAATGGAGCAGTATAGTTTGGCTTGCAAAGAAGCTATTGCAGCAAAGCAGAAGGTAATGAAGCTTGAACAAATTAGGGAAGAAGAAGAACGCAACCTAGAAAAAGCTAGGCTTGCTGAAGAGGCCGCATTGGCTCTGGCAGAGGTGGAGAGGGAGAAAGCCAGGGCTGCACTGGAGTCAGCACAGATGGCAAAACGCCTCGCCGAAATGGAGACCGACAAGAGAAAGCATGCTGAAATGAAAGCCATGCATGAACAAGAGGAGAGGAAGAAAGCAGTAAATGCACTTGCACAAAATAGTATCCTATGTAGAAAATACAATATTTCAGAAATTGAGGTAGCAACGAACTACTTTGACAGTTCTCTAAAAATTGGTGAAGGTGGATATGGACCTGTTTTCAAAGGGGTGCTTGATCACACTGCTGTTGCCATTAAGGTTGAAGTTTTGAGCACCATAAGACATCCTAACATGGTTCTCCTCCTAGGTGCCTGCCCAGAGTATGGATGCCTTGTGTACGAATACTTGGAAAATGGCAGCTTAGAAGATCGTCTCTTCCTGAAAGATAATACCCCACCGATTCCATGGAAACTACGATTCAAAATTGCAGCAGAAATTGCCACTTGCCTTCATTTCCTTCACCAAACAAGACCTGAACCGTTGGTGCATCGTGACCTCAAGCCTGCAAATATTCTCTTAGACAAGAACTACAAGAGCAAGATCAGTGATGTAGGTTTGGCCAGGCTTGTTCCTCCATCTGTTGCTGATAAAACCACCCAATATCGGATGACAGCGGCAGCTGGTACATTCTGTTACATTGACCCGGAGTATCAGCAAACTGGATTGTTGGGTGTAAAATCAGACATATATTCGTTAGGTGTATTGCTTCTTCAGATTATTACTGGAAAGCCTCCTATGGGTTTGGCACACCTGGTTGAGAAAGCTATCCAAACAGGCAAATTTCCGGAGGTGCTTGATCCAAGTGTGACAGATTGGCCTGTCGAAGAGGCTTTATCATGTGCTATGTTGGCTTTGAAGTGTTGTGAGTTGAGGAAACGGGACAGACCAAGTCTTGGTTCTGTCATTTTGGCGGAGCTGGATCGACTTAAAGATTTGGGAGGAGACACTGACAATGATCACAGACCTGTAAGCCAGCCTTCAAAACGAGAAGTGGAAAATGAAATGAAAAACAGGAAGGTTTATAATGACCAATATACCATATTTAAGGAAACAGGTTCAAGCCTCACTTATCAGAGTGCCATTCACCAACCATCCCCTGTTATGTGA 2349 0.4381 MTLSRTASNLGEGSAVVVAAGATVIAIDKDKNSQHAVKWAADHLLKNSSCTLIHVRTKSLHPRRYSSLSTSPSPCMITITVIKYLNLIGNIYALVGAVMGCYDDDAFHKEGLPPTEEELHQFFLPLRGFCARKGIAAKELVLQDHDVASALTDYIVNNSIRNLVVGASHRNALTRKFKDVDVPTRLVKSVPESCTIHVVSKGKVQNIKPIGHHQNISIKETSSPRENSLADYLHKLPNTPDSEEANSHGCGQGLGLDRVSFGQNHNATQTVQHKLNGEANSPRKSLETSSPNSPNQNPYSFISDISGPPSFQSIDKLQENQEASVDSDSSSSPSSAKTPKGLEAEIRKLKLELKKTMEQYSLACKEAIAAKQKVMKLEQIREEEERNLEKARLAEEAALALAEVEREKARAALESAQMAKRLAEMETDKRKHAEMKAMHEQEERKKAVNALAQNSILCRKYNISEIEVATNYFDSSLKIGEGGYGPVFKGVLDHTAVAIKVEVLSTIRHPNMVLLLGACPEYGCLVYEYLENGSLEDRLFLKDNTPPIPWKLRFKIAAEIATCLHFLHQTRPEPLVHRDLKPANILLDKNYKSKISDVGLARLVPPSVADKTTQYRMTAAAGTFCYIDPEYQQTGLLGVKSDIYSLGVLLLQIITGKPPMGLAHLVEKAIQTGKFPEVLDPSVTDWPVEEALSCAMLALKCCELRKRDRPSLGSVILAELDRLKDLGGDTDNDHRPVSQPSKREVENEMKNRKVYNDQYTIFKETGSSLTYQSAIHQPSPVM 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1378 782 CDD STK_N 27 202 - -
Dere12g1378 782 SMART serkin_6 473 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1378 782 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 24 177 - -
Dere12g1378 782 MobiDBLite consensus disorder prediction 727 750 - -
Dere12g1378 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 575 587 IPR008271 GO:0004672|GO:0006468
Dere12g1378 782 Gene3D HUPs 21 200 IPR014729 -
Dere12g1378 782 Coils Coil 367 442 - -
Dere12g1378 782 MobiDBLite consensus disorder prediction 259 338 - -
Dere12g1378 782 SUPERFAMILY Protein kinase-like (PK-like) 454 716 IPR011009 -
Dere12g1378 782 MobiDBLite consensus disorder prediction 232 343 - -
Dere12g1378 782 ProSiteProfiles Protein kinase domain profile. 473 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1378 782 Gene3D Phosphorylase Kinase; domain 1 430 529 - -
Dere12g1378 782 Pfam Protein kinase domain 499 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1378 782 Gene3D Transferase(Phosphotransferase) domain 1 530 739 - -
Dere12g1378 782 PANTHER OS02G0152300 PROTEIN 24 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1378 Dere-ChrDere12 25462481 25468298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1378 21 734 Receptor kinase-like Gene Family AT1G17540 43.576 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Dere12g1378 Pkinase 2.9e-31 CL0016