Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1373 ATGAATGAAAACCCCATTGGTTGTTTTCTGCATTCTGATTTTGCCTTGGCACTGCACTCTCACAGAGATAGGGGGGAGAGTGAGACGGACGGAGGGAGGGAGGAAGCAATGGATGCTCGAGCACAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGGACTCATAAAAGCCCTCACCACCGACGTTGAAGAATTCTACAACCAATGTGATCCTGAAAAGGAGAATTTGTGCTTGTATGGGTTTCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCAGAGCCTGTGCTGGGCATAAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTAGTTGCAGTCCACAGTGATGCATGGTTACTTGCTATTGCTTTCTACTTTGGTGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGGCTCTTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTACGGGTACAGCAAAGAAACAAGTAAAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCAAAGTCCAACTCTAAAGCGCGGGCTTCAGAATCTCTGGGCAAGCATTCAAGGGCAATGCAATCAAGAGATGACGAAGAAGGACTGGATGAGGTAGACGAAGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGCGAGAATTATGGTACTGATGAATTCTGGATTTGTTGTGACATCTGTGAGAAATGGTTCCACGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCGTCATGCAGTAACAACAAGAGAGCTCGCCCCTGA 873 0.4605 MNENPIGCFLHSDFALALHSHRDRGESETDGGREEAMDARAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQVKEKSSVSNHSGSKSKSNSKARASESLGKHSRAMQSRDDEEGLDEVDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNNKRARP 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1373 290 PANTHER CPG BINDING PROTEIN 44 289 IPR045104 GO:0006355|GO:0042393
Dere12g1373 290 SMART PHD_3 235 283 IPR001965 -
Dere12g1373 290 ProSitePatterns Zinc finger PHD-type signature. 236 282 IPR019786 -
Dere12g1373 290 ProSiteProfiles Zinc finger PHD-type profile. 233 285 IPR019787 -
Dere12g1373 290 MobiDBLite consensus disorder prediction 181 202 - -
Dere12g1373 290 CDD PHD_AL_plant 235 285 IPR044104 -
Dere12g1373 290 SUPERFAMILY FYVE/PHD zinc finger 227 286 IPR011011 -
Dere12g1373 290 FunFam PHD finger alfin-like protein 228 284 - -
Dere12g1373 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 284 IPR013083 -
Dere12g1373 290 Pfam PHD-finger 236 284 IPR019787 -
Dere12g1373 290 MobiDBLite consensus disorder prediction 203 219 - -
Dere12g1373 290 MobiDBLite consensus disorder prediction 181 228 - -
Dere12g1373 290 Pfam Alfin 47 175 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1373 Dere-ChrDere12 25436055 25442111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1373 41 289 Alfin-like Transcription Factor Family AT3G42790 75.904 3.38e-126 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Dere12g1373 Alfin 3.8e-69 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1373 12 25436055 25442111 Dere11g1465 11 26991218 26998089 CCT
Dere11g1465 11 26991218 26998089 Dere12g1373 12 25436055 25442111 ECH
Dere12g1373 12 25436055 25442111 Dere12g1373 12 25436055 25442111 ECH