Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1372 ATGAAACGCCCTTCAGTCGCGCGTGAAAGAGGCGAGCTGGAAGGCCTACAGGTCCTGGGCGTCTGAGACGTCCCTTCTTCAATACTTGGCACTAAAGCCAACACACCCAATACGCCAAATACAAGGAAGAAGAGTCTCTTTCTGAACTTAGGAGGACGAAGACATGCACAGGTACAAGGAATTGCTATCCTTACAGCAATCATCTGCCTCAAAAGTCTGAGCTTGAAGATGGAAGTTCTGCCTCAACAATGTCACAATACCAAGCCACTGACTTTCCAATTTCATGATCAGGATTCATCTTCATCTCAATCAACTGGTCAGTCTTATCCTGAAGTTGGTTCAGCTCAATCAGGTCAAATTTCTATCCAGTATAGCAATTCTTCTGCGCGTTCAACATGTAGCACAACTGGAGGAGTTCTCATCAGGTCATCTTTGGGGAGTCAGAGTTTTTGCTTTCCTCCTTTGCAAGTAAATCATAACCGATCAACTGGTCATATTGCATTCTATGATGCTGAACCATGCTTTGATGGTTTACTAGCTGCTGCATATGGGCCACAGTCTCAGATTCATCAGGCCCAACTAATGGGATTAACTTCTGTTAGAGTTCCTCTTCCTCTTGATCTTACAGAAGAACCAATATATGTGAATGCAAAGCAGTACCATGCTATTCTGAGGCGTAGACATTATCGTGCAAAACTTGAAGCACAGAACAAACTCATCAAAGCTCGGAAACCATATCTTCATGAGTCCCGGCATCGGCACGCATTAAAGAGGGCTAGAGGTTCTGGTGGACGCTTTCTCAACACCAAACAACTCCAAGAAGGAAAGCTCACAACAGAAAACCATGGTCTGAAAGTTTCAGGTGGTACTAGGTTGAATCTGAGTGGAAATATGGCAGATTCCAAAGTTCATCCTGATGTAGAAAACTACAGAAATGGTGCTTGCACCACCCGTTCTGATGTCACAAGTGCATTGAATGGCGATGGCATCTTCCAGCAGCACGAGTCCAACTTCAGGCTCTCTAATTACCCTTCTCACGTTGGAAGGGACCTGCAAGCTTACCCAACTGATACCCGCGGTGCTGCCGGAAATCATCACCATGTGTCTATCCTCATGTGA 1119 0.4531 MKRPSVARERGELEGLQVLGVXDVPSSILGTKANTPNTPNTRKKSLFLNLGGRRHAQVQGIAILTAIICLKSLSLKMEVLPQQCHNTKPLTFQFHDQDSSSSQSTGQSYPEVGSAQSGQISIQYSNSSARSTCSTTGGVLIRSSLGSQSFCFPPLQVNHNRSTGHIAFYDAEPCFDGLLAAAYGPQSQIHQAQLMGLTSVRVPLPLDLTEEPIYVNAKQYHAILRRRHYRAKLEAQNKLIKARKPYLHESRHRHALKRARGSGGRFLNTKQLQEGKLTTENHGLKVSGGTRLNLSGNMADSKVHPDVENYRNGACTTRSDVTSALNGDGIFQQHESNFRLSNYPSHVGRDLQAYPTDTRGAAGNHHHVSILM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1372 372 SMART cbf3 208 269 IPR001289 GO:0003700|GO:0006355
Dere12g1372 372 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 211 266 IPR001289 GO:0003700|GO:0006355
Dere12g1372 372 PRINTS CCAAT-binding transcription factor subunit B signature 212 234 IPR001289 GO:0003700|GO:0006355
Dere12g1372 372 PRINTS CCAAT-binding transcription factor subunit B signature 243 266 IPR001289 GO:0003700|GO:0006355
Dere12g1372 372 ProSitePatterns NF-YA/HAP2 subunit signature. 214 234 IPR018362 GO:0003677|GO:0016602
Dere12g1372 372 Gene3D - 209 270 - -
Dere12g1372 372 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 82 338 IPR001289 GO:0003700|GO:0006355
Dere12g1372 372 ProSiteProfiles NF-YA/HAP2 family profile. 209 269 IPR001289 GO:0003700|GO:0006355
Dere12g1372 372 MobiDBLite consensus disorder prediction 91 113 - -
Dere12g1372 372 MobiDBLite consensus disorder prediction 349 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1372 Dere-ChrDere12 25421388 25426099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1372 71 366 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.574 1.29e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere12g1372 CBFB_NFYA 6.7e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere12g1372 12 25421388 25426099 Dere12g1372 12 25421388 25426099 ECH