Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1366 ATGTACGATCATACACCAATTCTGATCGTAGGAGCAGTGGTAATTTCAGTGCTATTTTTCAGCTTCTTATTGCTTGGTTGGTACACCAACAGAAGTATTAATATCATACAATCCCTTCCATCCACATCAACACGCATACCTTCTGATAACAAGTTATCTTCCTGCGCGAGCTTAAGTTTAGAGTCTCATTCCAAGACATTCCACTTTAAAGCAGCAGAAACTATGCAAGGCACTGAACAGACCGAATGTATCATCTGCTTGACACCCTTTGAAGAAGAAGAAAATCTGAGGCAGCTGCATAGCTGCAGACACACCTTTCATACACCTTGCATTGATATGTGGCTTGGCTCCCATTCTGGCTGCCCTTTGTGCAGAACCCAGATCGACCATGCGTCTTCCCCAAATGGGTCTCTGGTTTCAGAGGAAAATGGTCAGAATCAGATGTTGGTCACTGTCGGCTATTGA 465 0.4387 MYDHTPILIVGAVVISVLFFSFLLLGWYTNRSINIIQSLPSTSTRIPSDNKLSSCASLSLESHSKTFHFKAAETMQGTEQTECIICLTPFEEEENLRQLHSCRHTFHTPCIDMWLGSHSGCPLCRTQIDHASSPNGSLVSEENGQNQMLVTVGY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1366 154 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Dere12g1366 154 SMART ring_2 83 124 IPR001841 -
Dere12g1366 154 SUPERFAMILY RING/U-box 69 130 - -
Dere12g1366 154 Pfam Ring finger domain 82 125 IPR001841 -
Dere12g1366 154 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 8 130 IPR044675 -
Dere12g1366 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 133 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1366 Dere-ChrDere12 25350066 25350530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1366 67 152 C3H Transcription Factor Family AT5G17600 40.698 9.80e-18 76.6