Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1364 ATGGAAACATTGGTTGGAATTGAGGATAATGATGAGGGAAAGCTTGAAGACAGTGGGGTTGTTAGAAGTAGCTCTGCTCTGTCTTCACCGAAGCAGATCGCCAACCCAGTTGTATACAAGCTTGTGCGGGTTGAAGGTGATGGGAGGTTAGTGCCCGCAACAGATGATGAAGTAATGGAGGTGGAGGACTTTCTTGAATATGACCAGATTGAAATGGGTGTTGATGCTGACACTGCGCACAGTGAAGGATGCACATCGATTGAAAGGTCTTCCTCTGGGAAGCTTCAATTGGAGTGCTCAGAAGACACTACAGAGGCTGATCTGGGGAAATTAAGTGCACGGCTTCAGTATATTGAGCAGATGTTGCAAAAAGTCAAACAGGAAGAGAAGCTTCGTTTAGCTTGTGGATCACCTGGTCTTTCTTATGTAAATATGGACAGCCAGTGTTCTGCTGCTGATTTGCCTGTCATGGATGGGGCAGTTCAATCTGATACTCCCTTCCAGGAAATGGTTCCTACTTTAGCACCGACTTTAAATAATAGTCATAGTAATCAATCACGAAGTATTGGTGAGTGTTCCAGACCTTCAGACGGACAGATAGAAAGTGGATCATCTACTTCTGCTGTCTATTCTACTTTGAAGCCTGATTTTTCAATGTTAAAAGGAGAAATATGCTTGGACAAGTTATCAATAAGAGAACTTCATGAACTGTTTAAAGTGACTTTTGGTCGGGAAACTACTGTGAAAGACAAGCAGTGGTTAAAGAGGAGGATTGCCATGAGTTTAACCAACTCATGTGATGTTTCAGCAGCAACTTTCATTGTTAAAGATAACAAATTAGTTAAAAAATGTGAGGATGATATTCAAGGAAAAGTGAATGCTGTACTCTTTAAGGATACTACAGCTGGAGAAGAGTATATCGACTGTAAGGATCCATCAACTGCTGGAGAAGAGTATATCAACTGTAAGGATCCATCGACTGCTGAGGGAGCTGGAAATGAAAATCAAGTTGTTTTTGGAAAGAGACTGAGAAATCATAACGTGGAACATGATTTGGATAGTGAGAGTCTTCAGACAGAACAAAGAGCTGCCAAAAGAATCCGTAAGCCAACGAAGAGATATATTGAAGAGCTCTCTGAAAATGAATCCAGAGACCACAACCCTAGATTGTTAAGTTTAAATAAAAATACGGGACCTGGACATGTCTCCCCAAACTCATACTTTGGGCCTGCTAGGAATGTTTTTTCAGAGGGAAGGACAGTTTTGACTAGGTTTGACTCACTGGGAGGTTCTGGGGTTTACATACCTTGTGTTTCTCGGGTTCGAAGAAGTCGTCCAAGGAAAAATATCATGCCTATTACGAAATTCCATCCAAGCATCGGCATAGTAGAGGCTACAAACTTAAGCAGTAAGGTCCTTAGAGAGCATGGTTCTCAAGTAGGTTGTGAGAGTTGGGACAAAGTATTGAAATCAAGATCTACACCTGCAAAATTTCAGCAGCTATCTTCTGTTGAGCCTGGGAAAGATAAACAATCTCCAGTAATGGACACAATTGAGCTGCGACAGGAATTGAGACTGAGAAAGGCAGATCTATCTACCTGTTCTTTGGATGACAACATAGTGACTGTTCCCACTTCTAAAGGTGGAATAAGAAGGAAACATCATCGAGCATGGACTCTTGTTGAGGTAATGAAATTGGTTGAAGGTGTATCGCGGTGTGGTGCAGGGAGGTGGTCTGAGATCAAACGGCTTGCCTTTGCTTCCTACTCATATCGAACATCTGTTGATCTTAAGGATAAGTGGAGGAATTTGCTTAAAGCTAGCTTTGCACAGGCAGCTGCAGACGAGGGTATGAACTCGCGGAAGCATGGTACGGTTCCCATTCCTGAGCCAATTTTAGTACGAGTAAGAGAGCTTGCTGAGTTGAATTCTCAGGTACCTGCAAATTTCAGCTCAAGCAAGCTAACGGCCAGTTCCAGGATCGACCATGATGAAAGATCAGGGTACTTGTAA 2013 0.4257 METLVGIEDNDEGKLEDSGVVRSSSALSSPKQIANPVVYKLVRVEGDGRLVPATDDEVMEVEDFLEYDQIEMGVDADTAHSEGCTSIERSSSGKLQLECSEDTTEADLGKLSARLQYIEQMLQKVKQEEKLRLACGSPGLSYVNMDSQCSAADLPVMDGAVQSDTPFQEMVPTLAPTLNNSHSNQSRSIGECSRPSDGQIESGSSTSAVYSTLKPDFSMLKGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSCDVSAATFIVKDNKLVKKCEDDIQGKVNAVLFKDTTAGEEYIDCKDPSTAGEEYINCKDPSTAEGAGNENQVVFGKRLRNHNVEHDLDSESLQTEQRAAKRIRKPTKRYIEELSENESRDHNPRLLSLNKNTGPGHVSPNSYFGPARNVFSEGRTVLTRFDSLGGSGVYIPCVSRVRRSRPRKNIMPITKFHPSIGIVEATNLSSKVLREHGSQVGCESWDKVLKSRSTPAKFQQLSSVEPGKDKQSPVMDTIELRQELRLRKADLSTCSLDDNIVTVPTSKGGIRRKHHRAWTLVEVMKLVEGVSRCGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASFAQAAADEGMNSRKHGTVPIPEPILVRVRELAELNSQVPANFSSSKLTASSRIDHDERSGYL 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1364 670 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 550 609 IPR017930 -
Dere12g1364 670 MobiDBLite consensus disorder prediction 177 204 - -
Dere12g1364 670 Gene3D - 545 653 - -
Dere12g1364 670 CDD SANT_TRF 556 606 - -
Dere12g1364 670 SMART sant 554 607 IPR001005 -
Dere12g1364 670 MobiDBLite consensus disorder prediction 378 401 - -
Dere12g1364 670 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 23 654 - -
Dere12g1364 670 Coils Coil 108 128 - -
Dere12g1364 670 Pfam Myb-like DNA-binding domain 557 605 IPR001005 -
Dere12g1364 670 SUPERFAMILY Homeodomain-like 552 610 IPR009057 -
Dere12g1364 670 ProSiteProfiles Myb-like domain profile. 558 605 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1364 Dere-ChrDere12 25331606 25339469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1364 558 616 Single Myb Histone (SMH) Gene Family AT1G17520 43.548 4.33e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dere12g1364 Myb_DNA-binding 7.6e-07 CL0123