Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1363 ATGGGTTTCTTAGACGCAACTAATTGCCGAGCGGAGGCTCAACTTTCTTCGGACTTCACACAAATTCGCCAACATGGCGACCCAAATGAGCAAAAAGCGAAAGTTTGTGGCAGATGGAGTTTTCTTTGCGGAGCTCAACGAGGTTTGACCAGGGAGCTAGCAGAGGATGGGTATTCTGGGGTTGAAGTTAGGGTTACTCCTATGCGGACGGAGATCATTATAAGGGCGACTCGCACTCAGAACGTTCTCGGTGAGAAGGGAAGGAGAATACGGGAGCTGACATCTGTTGTGCAGAAGCGTTTCAAGTTTCCTGAGAACAGTGTTGAACTTTATGCGGAGAAAGTCAACAACAGAGGGCTCTGTGCTATTGCTCAGGCAGAGTCTCTGCGTTACAAGCTTCTAGGAGGGCTTGCTGTTCGGAGGGCTTGCTATGGTGTCTTGAGGTTTGTTATGGAAAGCGGTGCTAAAGGTTGTGAGGTTATTGTTAGTGGCAAGCTCAGGGCTCAGCGTGCCAAGTCTATGAAATTCAAGGATGGTTACATGATATCATCTGGTCAGCCTGTGAAAGAATATATTGACTCTGCTGTGAGGCATGTCCTTTTGAGACAGGGTGTTCTTGGGATCAAGGTGAAAATCATGCTTGATTGGGATCCTAAGGGTAAGCAAGGCCCAACAAAACCACTGCCTGATTTGGTTACCATCCATCCGCCAAAGGAGGAAGAGGATTACACTGTCAAGCCTCTTTCACAGCCTGCCAACATAGAAATTGCAGTGGTGTAG 780 0.4795 MGFLDATNCRAEAQLSSDFTQIRQHGDPNEQKAKVCGRWSFLCGAQRGLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPTKPLPDLVTIHPPKEEEDYTVKPLSQPANIEIAVV 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1363 259 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 49 222 - -
Dere12g1363 259 FunFam 40S ribosomal protein S3 31 116 - -
Dere12g1363 259 Pfam KH domain 49 117 IPR004044 GO:0003723
Dere12g1363 259 ProSiteProfiles Type-2 KH domain profile. 45 116 IPR004044 GO:0003723
Dere12g1363 259 Gene3D - 30 115 IPR015946 -
Dere12g1363 259 Pfam Ribosomal protein S3, C-terminal domain 130 212 IPR001351 GO:0003735|GO:0006412
Dere12g1363 259 FunFam 40S ribosomal protein S3 117 253 - -
Dere12g1363 259 Gene3D - 117 243 IPR036419 -
Dere12g1363 259 NCBIfam 30S ribosomal protein S3 49 234 IPR005703 GO:0003735|GO:0006412|GO:0015935
Dere12g1363 259 SUPERFAMILY Ribosomal protein S3 C-terminal domain 117 215 IPR036419 -
Dere12g1363 259 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 48 123 IPR009019 GO:0003723
Dere12g1363 259 ProSitePatterns Ribosomal protein S3 signature. 171 207 IPR018280 -
Dere12g1363 259 CDD KH-II_40S_S3 49 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1363 Dere-ChrDere12 25323399 25329463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1363 31 243 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 84.977 6.69e-132 371