Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1354 ATGGAACCAAACCCAGCATCAGACTACATTCTAGATTGGATAGAAGGTTCTGTTTCTTTATTCCCATCTTTCTTGGATGATCCATATAACTCGGGTTGTATTGAAGATTACCAATTGTGGGGTCAGGGACAAGACATAGGGCAACAGTACCAGGTTGATGCTGGTCCTGGATCTCCCAATGTCACCACCACCACCACCATGTCTGCAGCTATTAGTACCAGCAAAACACCCACTGAGCCTTATAGTTCTATTAATCCACCTTCTTCTGATCTGCCAAAGAAAAGGAAGGCTTCTGATGATTTATGTCTCAAACCATCTCAGAATCATAAGGCCAAGAAAAGTAAGAGCCGTCCAGTGAGTGAAGCTGACAATGGAGATGAATTTGTAGAAGGGACAACAGTTAAGAAATCTGCATGGAACAAGAAGGGATCTGCCAACTGTAATAACGGTAACAAGGAAGGGAGGTGGGCTGAGCAGTTGCTGAACCCTTGTGCTGTAGCCTTGGCTGCAGGGAATCTGAATCGTGTGCAGCACCTCTTGTATGTTCTCCATGAACTCGCCTCGCTCACCGGTGATGCCAATCACCGGCTCGCCGCTCATGGTCTCCGAGCACTGACACACCAGTTATCTTCTTCCACTTCCTTTTCTTCCTCCACTTCTTCTGCAGGGCCTGTTACTTTTGCTTCTGCAGACCCACGGTTCTTCCAAAGATCTCTGCTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCCTTTCCTAATAACATAGCAAATTCTTCCATTCTGCAAATTCTTGCTGAAGAATCTAATAGTTCAAATACCCTTCACATCATTGACATTGGGGTCTCTCATGGTTTTCAATGGCCAACATTTCTTGAGGCCTTGACTCGCCGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTGGTTACTGCCTCAGCAGAAAATGACCAAAATATGGAGACCCCATTTTCAATAGGTCCACCTGGAGACAACTTCTCTTCTAGACTCCTTGGTTTTGCCAAGTCTTTGAACATCAATTTACAGATAAACAGGCTCGATAATCATCCATTACAGAATCTAAATGCCCAAATTCTCAACGCCTCGCCAGATGAAACCCTTATTGTATGCGCACAATTTAGGCTACACCATCTGAATCATAACACTCCTGATGAGCGGAGTGAATTTCTGAAGGTGCTGAGGAACATGGAGCCCAAGGGGGTGATACTAAGCGAGAACAACATGGAATGCTGCTGCAACAGTTGTGGGAATTTCGCCACTGGGTTCGAGCGAAGAGTGGAGTTCTTATGGAAGTTTCTGGATTCGATAAGCTCAGCGTTCAAGGGCCGGGAGAGCGAGGAGAGGAGATTGATGGAAGTAGAGGCTGCAAAAGCATTGACAAACCAGCGTGAGATGAATGAAGGGAAAGAGAAATGGTGTGATAGAATGAAAGAAGCAGCGTTTGGAGAGGAGATATTCGGCGAGGACGCCATTGATGGAGCTCGAGCTTTGTTGAGGAAGTATGATAATAATTGGGAGATGAAAGTGGAAGACAATCATGCCAGTATAGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGTTCTTTGTGGAAGCCGAACAAGAACGATTAG 1635 0.4593 MEPNPASDYILDWIEGSVSLFPSFLDDPYNSGCIEDYQLWGQGQDIGQQYQVDAGPGSPNVTTTTTMSAAISTSKTPTEPYSSINPPSSDLPKKRKASDDLCLKPSQNHKAKKSKSRPVSEADNGDEFVEGTTVKKSAWNKKGSANCNNGNKEGRWAEQLLNPCAVALAAGNLNRVQHLLYVLHELASLTGDANHRLAAHGLRALTHQLSSSTSFSSSTSSAGPVTFASADPRFFQRSLLKFYEVSPWFSFPNNIANSSILQILAEESNSSNTLHIIDIGVSHGFQWPTFLEALTRRPGGPPPLVRLTVVTASAENDQNMETPFSIGPPGDNFSSRLLGFAKSLNINLQINRLDNHPLQNLNAQILNASPDETLIVCAQFRLHHLNHNTPDERSEFLKVLRNMEPKGVILSENNMECCCNSCGNFATGFERRVEFLWKFLDSISSAFKGRESEERRLMEVEAAKALTNQREMNEGKEKWCDRMKEAAFGEEIFGEDAIDGARALLRKYDNNWEMKVEDNHASIGLWWKGQPVSFCSLWKPNKND 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1354 544 MobiDBLite consensus disorder prediction 114 128 - -
Dere12g1354 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 140 527 IPR005202 -
Dere12g1354 544 MobiDBLite consensus disorder prediction 69 89 - -
Dere12g1354 544 ProSiteProfiles GRAS family profile. 148 539 IPR005202 -
Dere12g1354 544 Coils Coil 450 470 - -
Dere12g1354 544 MobiDBLite consensus disorder prediction 92 107 - -
Dere12g1354 544 Pfam GRAS domain family 158 539 IPR005202 -
Dere12g1354 544 MobiDBLite consensus disorder prediction 69 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1354 Dere-ChrDere12 25180828 25182462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1354 3 539 GRAS Transcription Factor Family AT3G13840 51.193 3.25e-172 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dere12g1354 GRAS 5.1e-76 CL0063