Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1343 ATGCCAGAGCTTGCTTTATTACCTAAGGAGTTTTGTTGGTTTTGTTTCATGGTTAATAATGGCTTTGATGCATCGGCTGGTGTGAAGTCAGGTTTAAATCTTGAGGGTGAGATTTCACCTGCAATAGGAGAGGAGGAGTTTGCTTCGAGCAAACAATGCTCTATTTTCCACATTGCCATCTATATTACAAACAAATCTGCTTGTAAACTAAAATTAGGAGATCTCAAAGGAGCATTGCTAGATACAGAATTTGTAATGCGTGATGGAGATGACAATGTCAAGGCTTTATTCCATCAAGGACAGGCATACATGGCACTTAATGACATTGATGTGGCAGTTGAAAGCTTTAAGAAGGCAGTGATCTTAGAGCCAAATGACGCTGGAATCAAAAAGGAACTTGCTGCTGCTGCTTGCTCTACTTAA 423 0.3995 MPELALLPKEFCWFCFMVNNGFDASAGVKSGLNLEGEISPAIGEEEFASSKQCSIFHIAIYITNKSACKLKLGDLKGALLDTEFVMRDGDDNVKALFHQGQAYMALNDIDVAVESFKKAVILEPNDAGIKKELAAAACST 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1343 140 SMART tpr_5 93 126 IPR019734 GO:0005515
Dere12g1343 140 Pfam Tetratricopeptide repeat 94 126 IPR013105 -
Dere12g1343 140 Gene3D Tetratricopeptide repeat domain 29 139 IPR011990 GO:0005515
Dere12g1343 140 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 63 134 IPR039663 -
Dere12g1343 140 ProSiteProfiles TPR repeat region circular profile. 93 126 - -
Dere12g1343 140 SUPERFAMILY TPR-like 59 136 IPR011990 GO:0005515
Dere12g1343 140 ProSiteProfiles TPR repeat profile. 93 126 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1343 Dere-ChrDere12 24887355 24888562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1343 37 132 Calmodulin-binding Proteins AT3G25230 39.583 2.40e-10 55.5