Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere12g1336 ATGCCTTCTAAATGGCTTCTTTTGAATAGCTTCATTCATGGCTGTTTGAGGCCCAATAAAGCATCCCTGTGCCCAGGTAATGATAACACCTCGGTCTCCAGAAAGACATGCTCAAGAAGACTCTCTCTCTCTGATCTGAGTAATTCTTCATCACTCTCTATCATGAGTGATCTGTCAAACTCTGTTCTTGGGTCAAATCTTCATATCTTCACCTACAAGGAGCTCAAGGCGATCACACACAGTTTCTGCAAAACCAGCGTTCTTGGAGAAGGTGGATTCGGGAAGGTTTACAAAGGCTTCATTGATGACAAGCTTAGGCCTGGTTTAAAAGCTCAAGTTGTAGCAGTTAAGTCTTTGGACTTGGATGGAAAACAAGGTCACAGAGAGTGGCTGGCTGAAGTGATCTTTCTGGGGCAACTGAAGCATCCCCATCTGGTGAACTTAATTGGATATTGCTGGGAAGATGAGCATAGGCTTCTTGTATACGAGTACATGGAGAGAGGCAATTTAGAGAACAAGCTTTTTAAGGGCTACTTAGCAGCCTTGCCATGGCTCACACGAATCAGAATAGCAATTGGAGCTGCAAAGGGACTTGCTTTCCTTCATGAAGAAGACCCACCAGTGATATACAGAGATGTCAAAGCTTCAAACATCCTGCTAGACGCTGATTACAATGCCAAGCTCTCTGATTTTGGGCTGGCCATAGATGGCCCAGAGCAAAACCAAACCCATATCACAACTCGAGTCATGGGAACCCATGGCTATGCAGCTCCAGAGTATATCACCTCAGGTCATTTGACAACCATGAGTGATGTGTATAGCTTTGGGGTGGTTCTCTTGGAGCTAATTACAGGGAAGAGGTCTGTGGATAAGAACCGTCCCATCAGAGAGCAGGATTTGGTGGAGTGGGCAAGACCTTTGTTAAGAGATCCTAACAAGCTAGAAAGAATAATGGACCCAAGACTAGACGGTCAGTACTCCTACGAAGGAGCTAGAAAAATGGCTGCTCTGGCTCACCAATGTCTGAGTCACCAAGCCAAGTGTAGGCCCTCCATGCGCACCGTGGTCAAGACCTTAGAGAGCCTCATGAATCTGACTGATATCCAGATGGGATATTTTGTCTACGTGGTTCCCACTGAATGCACAGAAGAAAAATCAGCTCGATGTGAGGATGGTGAAGTTAGAAGAAGCGGGAATGTAAGTGAAGAACAGAAGAAGAAGAAGAAGAAGATGGAGGGTCGTCACAGAAATGGAAAAAGTCAAAGAAAAAGACCTCAGATTAAGCCATTGAGATCATCTCGCTCTGTTTATACTGATACTGCTCTGTACAAAACTCTTGGTACGAGTCTTTACTCTCCCAAGGAAGCACAAGAATTAAAGGGAAATGGCCAATAG 1395 0.4495 MPSKWLLLNSFIHGCLRPNKASLCPGNDNTSVSRKTCSRRLSLSDLSNSSSLSIMSDLSNSVLGSNLHIFTYKELKAITHSFCKTSVLGEGGFGKVYKGFIDDKLRPGLKAQVVAVKSLDLDGKQGHREWLAEVIFLGQLKHPHLVNLIGYCWEDEHRLLVYEYMERGNLENKLFKGYLAALPWLTRIRIAIGAAKGLAFLHEEDPPVIYRDVKASNILLDADYNAKLSDFGLAIDGPEQNQTHITTRVMGTHGYAAPEYITSGHLTTMSDVYSFGVVLLELITGKRSVDKNRPIREQDLVEWARPLLRDPNKLERIMDPRLDGQYSYEGARKMAALAHQCLSHQAKCRPSMRTVVKTLESLMNLTDIQMGYFVYVVPTECTEEKSARCEDGEVRRSGNVSEEQKKKKKKMEGRHRNGKSQRKRPQIKPLRSSRSVYTDTALYKTLGTSLYSPKEAQELKGNGQ 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere12g1336 464 MobiDBLite consensus disorder prediction 390 408 - -
Dere12g1336 464 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Dere12g1336 464 FunFam Serine/threonine-protein kinase BIK1 49 164 - -
Dere12g1336 464 SMART serkin_6 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere12g1336 464 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 165 370 - -
Dere12g1336 464 CDD STKc_IRAK 88 362 - -
Dere12g1336 464 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Dere12g1336 464 PANTHER OS01G0588500 PROTEIN-RELATED 49 362 - -
Dere12g1336 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Dere12g1336 464 SUPERFAMILY Protein kinase-like (PK-like) 57 360 IPR011009 -
Dere12g1336 464 Gene3D Transferase(Phosphotransferase) domain 1 165 372 - -
Dere12g1336 464 Pfam Protein tyrosine and serine/threonine kinase 86 359 IPR001245 GO:0004672|GO:0006468
Dere12g1336 464 MobiDBLite consensus disorder prediction 390 435 - -
Dere12g1336 464 MobiDBLite consensus disorder prediction 409 429 - -
Dere12g1336 464 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere12g1336 Dere-ChrDere12 24682057 24683917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere12g1336 68 402 Glycoside Hydrolase AT3G07070 47.929 3.05e-104 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Dere12g1336 PK_Tyr_Ser-Thr 3.6e-46 CL0016